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2Pushing Optimal ABox Repair from ℰℒ Towards More Expressive Horn-DLs (Extended Version)
F. Baader, and F. Kriegel. LTCS-Report, 22-02. Chair of Automata Theory, Institute of Theoretical Computer Science, Technische Universität Dresden, Dresden, Germany, (2022)
2 days ago by @scadsfct
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2SetQuence & SetOmic: Deep Set Transformer-based Representations of Cancer Multi-Omics
N. Jurenaite, D. León-Periñán, V. Donath, S. Torge, and R. Jäkel. 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), page 1-9. (August 2022)
29 days ago by @scadsfct
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2SetQuence & SetOmic: Deep Set Transformers for Whole Genome and Exome Tumour Analysis
N. Jurenaite, D. León-Periñán, V. Donath, S. Torge, and R. Jäkel. BioSystems, (January 2024)
29 days ago by @scadsfct
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1Freiheit und Kalkül. Die Politik der Algorithmen
S. Müller-Mall. (October 2020)
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1Description Logics that Count, and What They Can and Cannot Count (Extended Abstract)
F. Baader, and F. De Bortoli. Proceedings of the 33rd International Workshop on Description Logics (DL'20), volume 2663 of CEUR Workshop Proceedings, Online, CEUR-WS, (2020)
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1Diagnostic performance of artificial intelligence for histologic melanoma recognition compared to 18 international expert pathologists
T. Brinker, M. Schmitt, E. Krieghoff-Henning, R. Barnhill, H. Beltraminelli, S. Braun, R. Carr, M. Fernandez-Figueras, G. Ferrara, S. Fraitag and 18 other author(s). J. Am. Acad. Dermatol., 86 (3): 640--642 (March 2022)
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1Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals
N. Bozhanova, A. Flyak, B. Brown, S. Ruiz, J. Salas, S. Rho, R. Bombardi, L. Myers, C. Soto, J. Bailey and 3 other author(s). Nat. Commun., 13 (1): 3178 (June 2022)
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1Inter-InnoLab collaboration: An investigation of the diversity and interconnection among Innovation Laboratories
A. Memon, K. Meyer, M. Thieme, and L. Meyer. J. Eng. Technol. Manag., (January 2018)
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1Genetic architecture of subcortical brain structures in 38,851 individuals
C. Satizabal, H. Adams, D. Hibar, C. White, M. Knol, J. Stein, M. Scholz, M. Sargurupremraj, N. Jahanshad, G. Roshchupkin and 279 other author(s). Nat. Genet., 51 (11): 1624--1636 (November 2019)
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1Hyperbolic Busemann Learning with ideal prototypes
M. Atigh, M. Keller-Ressel, and P. Mettes. (2021)
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1Rosetta design with co-evolutionary information retains protein function
S. Schmitz, M. Ertelt, R. Merkl, and J. Meiler. PLoS Comput. Biol., 17 (1): e1008568 (January 2021)
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1A collection of deep learning-based feature-free approaches for characterizing single-objective continuous fitness landscapes
M. Seiler, R. Prager, P. Kerschke, and H. Trautmann. Proceedings of the Genetic and Evolutionary Computation Conference, New York, NY, USA, ACM, (July 2022)
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1Digitale Transformationen von Öffentlichkeit. Ausgangspunkte und Horizonte einer transdisziplinären Perspektivbildung
J. Kruse, and S. Müller-Mall. Digitale Transformationen der Öffentlichkeit, Velbrück Wissenschaft, (2020)
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1Automated algorithm selection in single-objective continuous optimization: A comparative study of deep learning and landscape analysis methods
R. Prager, M. Seiler, H. Trautmann, and P. Kerschke. Lecture Notes in Computer Science, Springer International Publishing, Cham, (2022)
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1Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region
C. Schoeder, P. Gilchuk, A. Sangha, K. Ledwitch, D. Malherbe, X. Zhang, E. Binshtein, L. Williamson, C. Martina, J. Dong and 10 other author(s). PLoS Pathog., 18 (5): e1010518 (May 2022)
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1Computational redesign of a fluorogen activating protein with Rosetta
N. Bozhanova, J. Harp, B. Bender, A. Gavrikov, D. Gorbachev, M. Baranov, C. Mercado, X. Zhang, K. Lukyanov, A. Mishin and 1 other author(s). PLoS Comput. Biol., 17 (11): e1009555 (November 2021)
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1Deep learning as a competitive feature-free approach for automated algorithm selection on the traveling salesperson problem
M. Seiler, J. Pohl, J. Bossek, P. Kerschke, and H. Trautmann. Parallel Problem Solving from Nature -- PPSN XVI, Springer International Publishing, Cham, (2020)
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1Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function
G. Davies, M. Lam, S. Harris, J. Trampush, M. Luciano, W. Hill, S. Hagenaars, S. Ritchie, R. Marioni, C. Fawns-Ritchie and 212 other author(s). Nat. Commun., (May 2018)
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1Hydra: a method for strain-minimizing hyperbolic embedding of network- and distance-based data
M. Keller-Ressel, and S. Nargang. J. Complex Netw., (February 2020)
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1Towards feature-free automated algorithm selection for single-objective continuous black-box optimization
R. Prager, M. Vinzent Seiler, H. Trautmann, and P. Kerschke. 2021 IEEE Symposium Series on Computational Intelligence (SSCI), IEEE, (December 2021)
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1On the potential of normalized TSP features for automated algorithm selection
J. Heins, J. Bossek, J. Pohl, M. Seiler, H. Trautmann, and P. Kerschke. Proceedings of the 16th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, New York, NY, USA, ACM, (September 2021)
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1Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults
E. Hofer, G. Roshchupkin, H. Adams, M. Knol, H. Lin, S. Li, H. Zare, S. Ahmad, N. Armstrong, C. Satizabal and 90 other author(s). Nat. Commun., 11 (1): 4796 (September 2020)
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1The hyperbolic geometry of financial networks
M. Keller-Ressel, and S. Nargang. Sci. Rep., 11 (1): 4732 (February 2021)
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1Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits
S. Vogelezang, J. Bradfield, T. Ahluwalia, J. Curtin, T. Lakka, N. Grarup, M. Scholz, P. van der Most, C. Monnereau, E. Stergiakouli and 136 other author(s). PLoS Genet., 16 (10): e1008718 (October 2020)
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1Comparison of Atom Maps
M. González Laffitte, N. Beier, N. Domschke, and P. Stadler. MATCH: Comm. Math. Comp. Chem., (2023)
2 months ago by @scadsfct
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1Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER distance restraints
D. Del Alamo, K. Jagessar, J. Meiler, and H. Mchaourab. PLoS Comput. Biol., 17 (6): e1009107 (June 2021)
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1General purpose structure-based drug discovery neural network score functions with human-interpretable pharmacophore maps
B. Brown, J. Mendenhall, A. Geanes, and J. Meiler. J. Chem. Inf. Model., 61 (2): 603--620 (February 2021)
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1A combined experimental and theoretical study of 1,4-bis(phenylethynyl)-2,5-bis(ethoxy)benzene adsorption on Au(111)
M. Lokamani, J. Kelling, R. Ohmann, J. Meyer, T. Kühne, G. Cuniberti, J. Wolf, T. Huhn, P. Zahn, F. Moresco and 1 other author(s). Surf. Sci., 712 (121877): 121877 (October 2021)
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1Framework for 2D-3D image fusion of infrared thermography with preoperative MRI
N. Hoffmann, F. Weidner, P. Urban, T. Meyer, C. Schnabel, Y. Radev, G. Schackert, U. Petersohn, E. Koch, S. Gumhold and 2 other author(s). Biomedical Engineering / Biomedizinische Technik, 62 (6): 599--607 (2017)
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1Grimjack at Touché 2022: Axiomatic Re-ranking and Query Reformulation
{. Reimer, J. Huck, and A. Bondarenko. Working Notes Papers of the CLEF 2022 Evaluation Labs, volume 3180 of CEUR Workshop Proceedings, (September 2022)
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1Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume
D. Vojinovic, H. Adams, X. Jian, Q. Yang, A. Smith, J. Bis, A. Teumer, M. Scholz, N. Armstrong, E. Hofer and 81 other author(s). Nat. Commun., 9 (1): 3945 (September 2018)
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1Prediction of amphipathic helix-membrane interactions with Rosetta
A. Gulsevin, and J. Meiler. PLoS Comput. Biol., 17 (3): e1008818 (March 2021)
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1Modern Talking in Key Point Analysis: Key Point Matching using Pretrained Encoders
J. Reimer, T. Luu, M. Henze, and Y. Ajjour. Proceedings of the 8th Workshop on Argument Mining, Association for Computational Linguistics, (2021)
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1Describing chain-like assembly of ethoxygroup-functionalized organic molecules on Au(111) using high-throughput simulations
Lokamani, J. Kelling, R. Ohmann, J. Meyer, T. Kühne, G. Cuniberti, J. Wolf, G. Juckeland, T. Huhn, P. Zahn and 2 other author(s). Sci. Rep., 11 (1): 14649 (July 2021)
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1Beyond the Imitation Game: Quantifying and extrapolating the capabilities of language models
A. Srivastava, A. Rastogi, A. Rao, A. Shoeb, A. Abid, A. Fisch, A. Brown, A. Santoro, A. Gupta, A. Garriga-Alonso and 435 other author(s). (2022)
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1Meta-information in conversational search
J. Kiesel, L. Meyer, M. Potthast, and B. Stein. ACM Trans. Inf. Syst., 39 (4): 1--44 (October 2021)
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1Big Data Services
L. Meyer, J. Frenzel, E. Peukert, R. Jäkel, and S. Kühne. Service Engineering, Springer Fachmedien Wiesbaden, Wiesbaden, (2018)
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1Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
J. Koehler Leman, S. Lyskov, S. Lewis, J. Adolf-Bryfogle, R. Alford, K. Barlow, Z. Ben-Aharon, D. Farrell, J. Fell, W. Hansen and 40 other author(s). Nat. Commun., 12 (1): 6947 (November 2021)
2 months ago by @scadsfct
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1On Logics and Homomorphism Closure
M. Bodirsky, T. Feller, S. Knauer, and S. Rudolph. 2021 36th Annual ACM/IEEE Symposium on Logic in Computer Science (LICS), IEEE, (June 2021)
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1Predicting the functional impact of KCNQ1 variants with artificial neural networks
S. Phul, G. Kuenze, C. Vanoye, C. Sanders, A. George, Jr, and J. Meiler. PLoS Comput. Biol., 18 (4): e1010038 (April 2022)
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1BCL::Conf: Improved open-source knowledge-based conformation sampling using the Crystallography Open Database
J. Mendenhall, B. Brown, S. Kothiwale, and J. Meiler. J. Chem. Inf. Model., 61 (1): 189--201 (January 2021)
2 months ago by @scadsfct
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1An empirical comparison of web page segmentation algorithms
J. Kiesel, L. Meyer, F. Kneist, B. Stein, and M. Potthast. Lecture Notes in Computer Science, Springer International Publishing, Cham, (2021)
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1Visual Web Archive Quality Assessment
T. Elstner, J. Kiesel, L. Meyer, M. Martius, S. Schmidt, B. Stein, and M. Potthast. Linking Theory and Practice of Digital Libraries, Springer International Publishing, Cham, (2022)
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1Towards complete and error-free genome assemblies of all vertebrate species
A. Rhie, S. McCarthy, O. Fedrigo, J. Damas, G. Formenti, S. Koren, M. Uliano-Silva, W. Chow, A. Fungtammasan, J. Kim and 117 other author(s). Nature, 592 (7856): 737--746 (April 2021)
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1Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review
L. Schneider, E. Krieghoff-Henning, S. Laiouar-Pedari, S. Kuntz, A. Hekler, J. Kather, T. Gaiser, S. Fröhling, and T. Brinker. Eur. J. Cancer, (September 2022)
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1PlaceWaters: Real-time, explicit interface water sampling during Rosetta ligand docking
S. Smith, L. Shub, and J. Meiler. PLoS One, 17 (5): e0269072 (May 2022)
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1Enhancing resilience of deep learning networks by means of transferable adversaries
M. Seiler, H. Trautmann, and P. Kerschke. 2020 International Joint Conference on Neural Networks (IJCNN), IEEE, (July 2020)
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1Representing fields without correspondences: The lifted Euler characteristic transform
H. Kirveslahti, and S. Mukherjee. (2021)
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1Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study
B. Guillen-Guio, J. Lorenzo-Salazar, S. Ma, P. Hou, T. Hernandez-Beeftink, A. Corrales, M. Garc\'ıa-Laorden, J. Jou, E. Espinosa, A. Muriel and 22 other author(s). Lancet Respir. Med., 8 (3): 258--266 (March 2020)
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1Distance multivariance: New dependence measures for random vectors
B. Böttcher, M. Keller-Ressel, and R. Schilling. Ann. Stat., 47 (5): 2757--2789 (October 2019)
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