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1A collection of deep learning-based feature-free approaches for characterizing single-objective continuous fitness landscapes
M. Seiler, R. Prager, P. Kerschke, and H. Trautmann. Proceedings of the Genetic and Evolutionary Computation Conference, New York, NY, USA, ACM, (July 2022)
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1Digitale Transformationen von Öffentlichkeit. Ausgangspunkte und Horizonte einer transdisziplinären Perspektivbildung
J. Kruse, and S. Müller-Mall. Digitale Transformationen der Öffentlichkeit, Velbrück Wissenschaft, (2020)
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1Automated algorithm selection in single-objective continuous optimization: A comparative study of deep learning and landscape analysis methods
R. Prager, M. Seiler, H. Trautmann, and P. Kerschke. Lecture Notes in Computer Science, Springer International Publishing, Cham, (2022)
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1Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region
C. Schoeder, P. Gilchuk, A. Sangha, K. Ledwitch, D. Malherbe, X. Zhang, E. Binshtein, L. Williamson, C. Martina, J. Dong and 10 other author(s). PLoS Pathog., 18 (5): e1010518 (May 2022)
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1Computational redesign of a fluorogen activating protein with Rosetta
N. Bozhanova, J. Harp, B. Bender, A. Gavrikov, D. Gorbachev, M. Baranov, C. Mercado, X. Zhang, K. Lukyanov, A. Mishin and 1 other author(s). PLoS Comput. Biol., 17 (11): e1009555 (November 2021)
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1Deep learning as a competitive feature-free approach for automated algorithm selection on the traveling salesperson problem
M. Seiler, J. Pohl, J. Bossek, P. Kerschke, and H. Trautmann. Parallel Problem Solving from Nature -- PPSN XVI, Springer International Publishing, Cham, (2020)
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1Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function
G. Davies, M. Lam, S. Harris, J. Trampush, M. Luciano, W. Hill, S. Hagenaars, S. Ritchie, R. Marioni, C. Fawns-Ritchie and 212 other author(s). Nat. Commun., (May 2018)
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1Hydra: a method for strain-minimizing hyperbolic embedding of network- and distance-based data
M. Keller-Ressel, and S. Nargang. J. Complex Netw., (February 2020)
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1Towards feature-free automated algorithm selection for single-objective continuous black-box optimization
R. Prager, M. Vinzent Seiler, H. Trautmann, and P. Kerschke. 2021 IEEE Symposium Series on Computational Intelligence (SSCI), IEEE, (December 2021)
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1On the potential of normalized TSP features for automated algorithm selection
J. Heins, J. Bossek, J. Pohl, M. Seiler, H. Trautmann, and P. Kerschke. Proceedings of the 16th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, New York, NY, USA, ACM, (September 2021)
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1Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults
E. Hofer, G. Roshchupkin, H. Adams, M. Knol, H. Lin, S. Li, H. Zare, S. Ahmad, N. Armstrong, C. Satizabal and 90 other author(s). Nat. Commun., 11 (1): 4796 (September 2020)
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1The hyperbolic geometry of financial networks
M. Keller-Ressel, and S. Nargang. Sci. Rep., 11 (1): 4732 (February 2021)
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1Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits
S. Vogelezang, J. Bradfield, T. Ahluwalia, J. Curtin, T. Lakka, N. Grarup, M. Scholz, P. van der Most, C. Monnereau, E. Stergiakouli and 136 other author(s). PLoS Genet., 16 (10): e1008718 (October 2020)
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1Comparison of Atom Maps
M. González Laffitte, N. Beier, N. Domschke, and P. Stadler. MATCH: Comm. Math. Comp. Chem., (2023)
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1Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER distance restraints
D. Del Alamo, K. Jagessar, J. Meiler, and H. Mchaourab. PLoS Comput. Biol., 17 (6): e1009107 (June 2021)
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1General purpose structure-based drug discovery neural network score functions with human-interpretable pharmacophore maps
B. Brown, J. Mendenhall, A. Geanes, and J. Meiler. J. Chem. Inf. Model., 61 (2): 603--620 (February 2021)
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1A combined experimental and theoretical study of 1,4-bis(phenylethynyl)-2,5-bis(ethoxy)benzene adsorption on Au(111)
M. Lokamani, J. Kelling, R. Ohmann, J. Meyer, T. Kühne, G. Cuniberti, J. Wolf, T. Huhn, P. Zahn, F. Moresco and 1 other author(s). Surf. Sci., 712 (121877): 121877 (October 2021)
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1Framework for 2D-3D image fusion of infrared thermography with preoperative MRI
N. Hoffmann, F. Weidner, P. Urban, T. Meyer, C. Schnabel, Y. Radev, G. Schackert, U. Petersohn, E. Koch, S. Gumhold and 2 other author(s). Biomedical Engineering / Biomedizinische Technik, 62 (6): 599--607 (2017)
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1Grimjack at Touché 2022: Axiomatic Re-ranking and Query Reformulation
{. Reimer, J. Huck, and A. Bondarenko. Working Notes Papers of the CLEF 2022 Evaluation Labs, volume 3180 of CEUR Workshop Proceedings, (September 2022)
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1Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume
D. Vojinovic, H. Adams, X. Jian, Q. Yang, A. Smith, J. Bis, A. Teumer, M. Scholz, N. Armstrong, E. Hofer and 81 other author(s). Nat. Commun., 9 (1): 3945 (September 2018)
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1Prediction of amphipathic helix-membrane interactions with Rosetta
A. Gulsevin, and J. Meiler. PLoS Comput. Biol., 17 (3): e1008818 (March 2021)
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1Modern Talking in Key Point Analysis: Key Point Matching using Pretrained Encoders
J. Reimer, T. Luu, M. Henze, and Y. Ajjour. Proceedings of the 8th Workshop on Argument Mining, Association for Computational Linguistics, (2021)
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1Describing chain-like assembly of ethoxygroup-functionalized organic molecules on Au(111) using high-throughput simulations
Lokamani, J. Kelling, R. Ohmann, J. Meyer, T. Kühne, G. Cuniberti, J. Wolf, G. Juckeland, T. Huhn, P. Zahn and 2 other author(s). Sci. Rep., 11 (1): 14649 (July 2021)
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1Beyond the Imitation Game: Quantifying and extrapolating the capabilities of language models
A. Srivastava, A. Rastogi, A. Rao, A. Shoeb, A. Abid, A. Fisch, A. Brown, A. Santoro, A. Gupta, A. Garriga-Alonso and 435 other author(s). (2022)
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1Meta-information in conversational search
J. Kiesel, L. Meyer, M. Potthast, and B. Stein. ACM Trans. Inf. Syst., 39 (4): 1--44 (October 2021)
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1Big Data Services
L. Meyer, J. Frenzel, E. Peukert, R. Jäkel, and S. Kühne. Service Engineering, Springer Fachmedien Wiesbaden, Wiesbaden, (2018)
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1Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
J. Koehler Leman, S. Lyskov, S. Lewis, J. Adolf-Bryfogle, R. Alford, K. Barlow, Z. Ben-Aharon, D. Farrell, J. Fell, W. Hansen and 40 other author(s). Nat. Commun., 12 (1): 6947 (November 2021)
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1On Logics and Homomorphism Closure
M. Bodirsky, T. Feller, S. Knauer, and S. Rudolph. 2021 36th Annual ACM/IEEE Symposium on Logic in Computer Science (LICS), IEEE, (June 2021)
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1Predicting the functional impact of KCNQ1 variants with artificial neural networks
S. Phul, G. Kuenze, C. Vanoye, C. Sanders, A. George, Jr, and J. Meiler. PLoS Comput. Biol., 18 (4): e1010038 (April 2022)
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1BCL::Conf: Improved open-source knowledge-based conformation sampling using the Crystallography Open Database
J. Mendenhall, B. Brown, S. Kothiwale, and J. Meiler. J. Chem. Inf. Model., 61 (1): 189--201 (January 2021)
2 months ago by @scadsfct
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1An empirical comparison of web page segmentation algorithms
J. Kiesel, L. Meyer, F. Kneist, B. Stein, and M. Potthast. Lecture Notes in Computer Science, Springer International Publishing, Cham, (2021)
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1Visual Web Archive Quality Assessment
T. Elstner, J. Kiesel, L. Meyer, M. Martius, S. Schmidt, B. Stein, and M. Potthast. Linking Theory and Practice of Digital Libraries, Springer International Publishing, Cham, (2022)
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1Towards complete and error-free genome assemblies of all vertebrate species
A. Rhie, S. McCarthy, O. Fedrigo, J. Damas, G. Formenti, S. Koren, M. Uliano-Silva, W. Chow, A. Fungtammasan, J. Kim and 117 other author(s). Nature, 592 (7856): 737--746 (April 2021)
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1Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review
L. Schneider, E. Krieghoff-Henning, S. Laiouar-Pedari, S. Kuntz, A. Hekler, J. Kather, T. Gaiser, S. Fröhling, and T. Brinker. Eur. J. Cancer, (September 2022)
2 months ago by @scadsfct
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1PlaceWaters: Real-time, explicit interface water sampling during Rosetta ligand docking
S. Smith, L. Shub, and J. Meiler. PLoS One, 17 (5): e0269072 (May 2022)
2 months ago by @scadsfct
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1Enhancing resilience of deep learning networks by means of transferable adversaries
M. Seiler, H. Trautmann, and P. Kerschke. 2020 International Joint Conference on Neural Networks (IJCNN), IEEE, (July 2020)
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1Representing fields without correspondences: The lifted Euler characteristic transform
H. Kirveslahti, and S. Mukherjee. (2021)
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1Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study
B. Guillen-Guio, J. Lorenzo-Salazar, S. Ma, P. Hou, T. Hernandez-Beeftink, A. Corrales, M. Garc\'ıa-Laorden, J. Jou, E. Espinosa, A. Muriel and 22 other author(s). Lancet Respir. Med., 8 (3): 258--266 (March 2020)
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1Distance multivariance: New dependence measures for random vectors
B. Böttcher, M. Keller-Ressel, and R. Schilling. Ann. Stat., 47 (5): 2757--2789 (October 2019)
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1Chasing Streams with Existential Rules
J. Urbani, M. Krötzsch, and T. Eiter. Proceedings of the 19th International Conference on Principles of Knowledge Representation and Reasoning, page 415--419. (August 2022)
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1Knowledge Graphs evolution and preservation -- A technical report from ISWS 2019
N. Abbas, K. Alghamdi, M. Alinam, F. Alloatti, G. Amaral, C. d'Amato, L. Asprino, M. Beno, F. Bensmann, R. Biswas and 64 other author(s). (2020)
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1The landscape of genomic alterations across childhood cancers
S. Gröbner, ICGC PedBrain-Seq Project, B. Worst, J. Weischenfeldt, I. Buchhalter, K. Kleinheinz, V. Rudneva, P. Johann, G. Balasubramanian, M. Segura-Wang and 76 other author(s). Nature, 555 (7696): 321--327 (March 2018)
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1Better a Microbenchmark on a Cluster than a User at the Office: Flink Cluster Benchmarking
D. Reichelt, L. Meyer, and S. Kühne. Softwaretechnik-Trends Band 39, Heft 3, page 52--54. Bonn, Gesellschaft für Informatik e.V., (2019)
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1125-129 10.1055/a-1030-3232 gockel Ines I Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Jansen-winkeln Boris B Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Sucher Robert R Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Rayes Nada N Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Thieme René R Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Moulla Yusef Y Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Niebisch Stefan S Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Rademacher Sebastian S Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Seehofer Daniel D Klinik und poliklinik für viszeral-, transplantations-, thorax- und gefäßchirurgie, Universitätsklinikum Leipzig AöR, Deutschland. Schierle Katrin K Institut für pathologie, Universitätsklinikum Leipzig AöR, Deutschland. Bläker Hendrik H Institut für pathologie, Universitätsklinikum Leipzig AöR, Deutschland. Neumuth Thomas T innovation center computer assisted surgery (ICCAS), Universität Leipzig, Deutschland. Melzer Andreas A innovation center computer assisted surgery (ICCAS), Universität Leipzig, Deutschland. Maktabi Marianne M innovation center computer assisted surgery (ICCAS), Universität Leipzig, Deutschland. Köhler Hannes H innovation center computer assisted surgery (ICCAS), Universität Leipzig, Deutschland. Chalopin Claire C innovation center computer assisted surgery (ICCAS), Universität Leipzig, Deutschland. Ger journal article hyperspektral-imaging (HSI) -- eine verlässliche gewebedifferenzierung? 2020 04 08
I. Gockel, B. Jansen-Winkeln, R. Sucher, N. Rayes, R. Thieme, Y. Moulla, S. Niebisch, S. Rademacher, D. Seehofer, K. Schierle and 6 other author(s). Zentralbl. Chir., 145 (2): 125--129 (April 2020)
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1Structural comparative modeling of multi-domain F508del CFTR
E. McDonald, H. Woods, S. Smith, M. Kim, C. Schoeder, L. Plate, and J. Meiler. Biomolecules, 12 (3): 471 (March 2022)
2 months ago by @scadsfct
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VX-809;
chaperones;
comparative
computational
cystic
discovery
disease;
drug
fibrosis;
folding
modeling;
pharmacological
protein
structure-based
topic_lifescience
VX-809;chaperones;comparativecomputationalcysticdiscoverydisease;drugfibrosis;foldingmodeling;pharmacologicalproteinstructure-basedtopic_lifescience
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1Genome-wide analysis identifies novel susceptibility loci for myocardial infarction
J. Hartiala, Y. Han, Q. Jia, J. Hilser, P. Huang, J. Gukasyan, W. Schwartzman, Z. Cai, S. Biswas, D. Trégouët and 53 other author(s). Eur. Heart J., 42 (9): 919--933 (March 2021)
2 months ago by @scadsfct
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Genetic
Genome-wide
Meta-analysis;
Myocardial
SLC44A3
association
factors;
infarction;
study;
topic_lifescience
GeneticGenome-wideMeta-analysis;MyocardialSLC44A3associationfactors;infarction;study;topic_lifescience
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1The human antibody sequence space and structural design of the V, J regions, and CDRH3 with Rosetta
S. Schmitz, E. Schmitz, J. Crowe, Jr, and J. Meiler. MAbs, 14 (1): 2068212 (January 2022)
2 months ago by @scadsfct
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Human-likeness;
HumanizationABBREVIATIONS
antibody
biostatistics;
design;
immunome
repertoire;
rosetta;
topic_lifescience
Human-likeness;HumanizationABBREVIATIONSantibodybiostatistics;design;immunomerepertoire;rosetta;topic_lifescience
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1Proteomics to improve phenotyping in obese patients with heart failure with preserved ejection fraction
K. Kresoja, K. Rommel, R. Wachter, S. Henger, C. Besler, N. Klöting, M. Schnelle, A. Hoffmann, P. Büttner, U. Ceglarek and 5 other author(s). Eur. J. Heart Fail., 23 (10): 1633--1644 (October 2021)
2 months ago by @scadsfct
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Biomarker;
Fibrosis;
Heart
Inflammation;
Obesity;
Proteomics
ejection
failure
fraction;
preserved
topic_lifescience
with
Biomarker;Fibrosis;HeartInflammation;Obesity;Proteomicsejectionfailurefraction;preservedtopic_lifesciencewith
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1Model soups improve performance of dermoscopic skin cancer classifiers
R. Maron, A. Hekler, S. Haggenmüller, C. von Kalle, J. Utikal, V. Müller, M. Gaiser, F. Meier, S. Hobelsberger, F. Gellrich and 23 other author(s). Eur. J. Cancer, (September 2022)
2 months ago by @scadsfct
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Artificial
Calibration;
Deep
Dermatology;
Ensembles;
Generalisation;
Melanoma;
Model
Nevus;
Robustness
intelligence;
learning;
soups;
topic_lifescience
ArtificialCalibration;DeepDermatology;Ensembles;Generalisation;Melanoma;ModelNevus;Robustnessintelligence;learning;soups;topic_lifescience
(0)
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1A multitask deep-learning method for predicting membrane associations and secondary structures of proteins
B. Li, J. Mendenhall, J. Capra, and J. Meiler. J. Proteome Res., 20 (8): 4089--4100 (August 2021)
2 months ago by @scadsfct
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convolutional
deep
learning;
long
memory
multitask
networks;
neural
prediction
prediction;
secondary
short-term
structure
topic_lifescience
topology
transmembrane
convolutionaldeeplearning;longmemorymultitasknetworks;neuralpredictionprediction;secondaryshort-termstructuretopic_lifesciencetopologytransmembrane
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