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1FROOM: A Framework of Operators for OTF2 Modification
J. Frenzel, {. Kulkarni, S. Döbel, B. Wesarg, M. Knespel, and H. Brunst. Proceedings of 2023 SC Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC Workshops 2023, page 1403–1411. United States of America, Association for Computing Machinery (ACM), New York, (Nov 12, 2023)Publisher Copyright: © 2023 Owner/Author..
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domain
language,
logs,
performance
performance,
software
specific
trace
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1A comparative patient-level prediction study in OMOP CDM: applicative potential and insights from synthetic data
N. Ahmadi, {. Nguyen, M. Sedlmayr, and M. Wolfien. Scientific reports, (Jan 27, 2024)
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Databases,
Electronic
FIS_scads
Factual,
Health
Humans,
Informatics,
Learning,
Machine
Medical
Records
topic_lifescience
Databases,ElectronicFIS_scadsFactual,HealthHumans,Informatics,Learning,MachineMedicalRecordstopic_lifescience
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1Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales
S. Seidemann, F. Salomon, {. Hoffmann, T. Kurth, {. Sbalzarini, R. Haase, and M. Ader. FRONTIERS IN MOLECULAR NEUROSCIENCE, (May 24, 2024)Copyright © 2024 Seidemann, Salomon, Hoffmann, Kurth, Sbalzarini, Haase and Ader..
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1A 4-Approximation Algorithm for Min Max Correlation Clustering.
{. Heidrich, J. Irmai, and B. Andres. Proceedings of The 27th International Conference on Artificial Intelligence and Statistics, page 1945--1953. Cambridge MA: JMLR, (2024)Publisher Copyright: Copyright 2024 by the author(s)..
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1Correlation Clustering of Organoid Images.
J. Presberger, R. Keshara, D. Stein, {. Kim, A. Grapin-Botton, and B. Andres. WorkingPaper, (March 2024)
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1Box Facets and Cut Facets of Lifted Multicut Polytopes
{. Naumann, J. Irmai, S. Zhao, and B. Andres. WorkingPaper, (2024)
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1Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data
A. Gupta, U. Günther, P. Incardona, G. Reina, S. Frey, S. Gumhold, and {. Sbalzarini. WorkingPaper, (Jun 17, 2022)
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Human-centered
Visualization
Visualization,
and
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techniques
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topic_visualcomputingtopic_lifescienceFIS_scadsHuman-centeredVisualizationVisualization,andcomputing,conceptsparadigms,techniquestheory,
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1Normalizing Flow based Feature Synthesis for Outlier-Aware Object Detection
N. Kumar, S. Segvić, A. Eslami, and S. Gumhold. WorkingPaper, (Feb 1, 2023)
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cs.CV
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1TmoTA: Simple, Highly Responsive Tool for Multiple Object Tracking Annotation
{. Oyshi, S. Vogt, and S. Gumhold. CHI 2023 - Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, Association for Computing Machinery, (Apr 19, 2023)Publisher Copyright: © 2023 ACM.; CHI Conference on Human Factors in Computing Systems 2023, CHI 2023 ; Conference date: 23-04-2023 Through 28-04-2023.
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labeling,
manual
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video
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1Examining Computational Performance of Unsupervised Concept Drift Detection: A Survey and Beyond
E. Werner, N. Kumar, M. Lieber, S. Torge, S. Gumhold, and {. Nagel. WorkingPaper, (Apr 17, 2023)
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cs.LG,
cs.PF
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1PEARL: Physical Environment based Augmented Reality Lenses for In-Situ Human Movement Analysis
W. Luo, Z. Yu, R. Rzayev, M. Satkowski, S. Gumhold, M. McGinity, and R. Dachselt. CHI '23: Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems, (Apr 19, 2023)Publisher Copyright: © 2023 Owner/Author..
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Analytics,
FIS_scads
Immersive
In-situ
affordance,
analysis,
augmented/mixed
data
movement
physical
reality,
referents,
visualization
topic_visualcomputingAnalytics,FIS_scadsImmersiveIn-situaffordance,analysis,augmented/mixeddatamovementphysicalreality,referents,visualization
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1Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data
A. Gupta, P. Incardona, P. Hunt, G. Reina, S. Frey, S. Gumhold, U. Günther, and {. Sbalzarini. WorkingPaper, (Jun 29, 2022)
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FIS_scads
Human-centered
Visualization
Visualization,
and
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concepts
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techniques
theory,
topic_visualcomputingtopic_lifescienceFIS_scadsHuman-centeredVisualizationVisualization,andcomputing,conceptsparadigmstechniquestheory,
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1Fantastic Hybrid User Interfaces and How to Define Them
M. Satkowski, and J. Méndez. (Oct 16, 2023)Publisher Copyright: © 2023 IEEE.; 22nd IEEE International Symposium on Mixed and Augmented Reality ; Conference date: 16-10-2023 Through 20-10-2023.
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1How Does Explainability Look in Hybrid User Interfaces?
J. Méndez, M. Satkowski, and R. Rzayev. (Oct 16, 2023)Publisher Copyright: © 2023 IEEE.; 22nd IEEE International Symposium on Mixed and Augmented Reality ; Conference date: 16-10-2023 Through 20-10-2023.
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FIS_scads
artificial
explainable
hybrid
intelligence,
interfaces,
mixed
reality
user
topic_visualcomputingFIS_scadsartificialexplainablehybridintelligence,interfaces,mixedrealityuser
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1Spatiality and Semantics - Towards Understanding Content Placement in Mixed Reality
{. Ellenberg, M. Satkowski, W. Luo, and R. Dachselt. CHI 2023 - Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems, page 254:1--254:8. United States of America, Association for Computing Machinery (ACM), New York, (Apr 19, 2023)Publisher Copyright: © 2023 Owner/Author..
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Augemented
Content
Design
FIS_scads
Layout,
Mixed
Organization,
Reality,
Space,
Study
User
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1Understanding Immersive Environments for Visual Data Analysis
M. Satkowski. Technische Universität Dresden, (Feb 6, 2024)
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topic_visualcomputing
Datenvisualisierung
Design,
FIS_scads
Immersive
Interaktion,
Mensch-Computer
Menschenzentriertes
Mixed
Reality,
Umgebungen,
topic_visualcomputingDatenvisualisierungDesign,FIS_scadsImmersiveInteraktion,Mensch-ComputerMenschenzentriertesMixedReality,Umgebungen,
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1Point Cloud Alignment through Mid-Air Gestures on a Stereoscopic Display
K. Krug, M. Satkowski, R. Docea, T. Ku, and R. Dachselt. CHI 2023 - Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems, page 230:1--230:7. United States of America, Association for Computing Machinery (ACM), New York, (Apr 19, 2023)Publisher Copyright: © 2023 Owner/Author..
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FIS_scads
alignment,
cloud
display,
guidance
image
interaction,
mid-air
navigation
point
registration,
stereoscopic
systems
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2Pruning and Early-Exit Co-Optimization for CNN Acceleration on FPGAs
G. Korol, {. Jordan, {. Rutzig, J. Castrillon, and {. Beck. 2023 Design, Automation and Test in Europe Conference and Exhibition, DATE 2023 - Proceedings, United States of America, Institute of Electrical and Electronics Engineers Inc., (2023)Publisher Copyright: © 2023 EDAA.; 2023 Design, Automation and Test in Europe Conference and Exhibition, DATE 2023 ; Conference date: 17-04-2023 Through 19-04-2023.
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Adaptive
CNN,
Computing,
Edge
FIS_scads
FPGA
Inference,
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2Design Space Exploration for CNN Offloading to FPGAs at the Edge
G. Korol, {. Jordan, {. Rutzig, J. Castrillon, and {. Beck. 2023 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2023 - Proceedings, United States of America, IEEE Computer Society, (2023)Publisher Copyright: © 2023 IEEE.; 21th IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2023 ; Conference date: 20-06-2023 Through 23-06-2023.
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topic_software
CNN,
Computing,
Edge
FIS_scads
FPGA,
IoT,
Offloading
topic_softwareCNN,Computing,EdgeFIS_scadsFPGA,IoT,Offloading
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1Scalable Event-by-event Processing of Neuromorphic Sensory Signals With Deep State-Space Models
M. Schöne, {. Sushma, J. Zhuge, C. Mayr, A. Subramoney, and D. Kappel. WorkingPaper, (2024)
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1ON-OFF Neuromorphic ISING Machines using Fowler-Nordheim Annealers
Z. Chen, Z. Xiao, M. Akl, J. Leugring, O. Olajide, A. Malik, N. Dennler, C. Harper, S. Bose, {. Gonzalez and 8 other author(s). WorkingPaper, (2024)
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1Single Train Multi Deploy on Topology Search Spaces using Kshot-Hypernet
J. Zhuge, {. Mayr, A. Subramoney, and D. Kappel. (2024)
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1Improving estimation for asymptotically independent bivariate extremes via global estimators for the angular dependence function
{. Murphy-Barltrop, {. Wadsworth, and {. Eastoe. Extremes : statistical theory and applications in science, engineering and economics, (Aug 13, 2024)Publisher Copyright: © The Author(s) 2024..
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1Developing a Fluvial and Pluvial Stochastic Flood Model of Southeast Asia
G. Olcese, {. Bates, {. Neal, {. Sampson, {. Wing, N. Quinn, {. Murphy-Barltrop, and I. Probyn. Water Resources Research, (Jun 3, 2024)Publisher Copyright: © 2024. The Authors..
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topic_mathfoundation
Asia,
FIS_scads
Southeast
exposure,
flood,
global
hydrological
modeling
models,
population
stochastic
topic_mathfoundationAsia,FIS_scadsSoutheastexposure,flood,globalhydrologicalmodelingmodels,populationstochastic
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1Inference for bivariate extremes via a semi-parametric angular-radial model
{. Murphy-Barltrop, E. Mackay, and P. Jonathan. Extremes : statistical theory and applications in science, engineering and economics, (Oct 3, 2024)Publisher Copyright: © The Author(s) 2024..
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1Streamlining intersectoral provision of real-world health data: a service platform for improved clinical research and patient care
K. Hoffmann, I. Nesterow, Y. Peng, E. Henke, D. Barnett, C. Klengel, M. Gruhl, M. Bartos, F. Nüßler, R. Gebler and 7 other author(s). Frontiers in medicine, (2024)Copyright © 2024 Hoffmann, Nesterow, Peng, Henke, Barnett, Klengel, Gruhl, Bartos, Nüßler, Gebler, Grummt, Seim, Bathelt, Reinecke, Wolfien, Weidner and Sedlmayr..
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1Towards Standardizing Ophthalmic Data for Seamless Interoperability in Eye Care
K. Hoffmann, Y. Peng, T. Schlosser, G. Stolze, H. Langner, M. Susky, T. Meyer, M. Ritter, D. Kowerko, V. Kakkassery and 2 other author(s). Studies in health technology and informatics, (Aug 30, 2024)Publisher Copyright: © 2024 The Authors..
a month ago by @scadsfct
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topic_lifescience
Diseases/therapy,
Electronic
Eye
FIS_scads
Germany,
Health
Humans,
Information
Interoperability/standards,
Learning,
Level
Machine
Ophthalmology
Records/standards,
Seven/standards,
topic_lifescienceDiseases/therapy,ElectronicEyeFIS_scadsGermany,HealthHumans,InformationInteroperability/standards,Learning,LevelMachineOphthalmologyRecords/standards,Seven/standards,
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1Leptin deficiency-caused behavioral change - A comparative analysis using EthoVision and DeepLabCut
D. Bühler, N. Power Guerra, L. Müller, O. Wolkenhauer, M. Düffer, B. Vollmar, A. Kuhla, and M. Wolfien. Frontiers in neuroscience, (Mar 24, 2023)Publisher Copyright: Copyright © 2023 Bühler, Power Guerra, Müller, Wolkenhauer, Düffer, Vollmar, Kuhla and Wolfien..
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topic_lifescience
Behavioral
Deep
DeepLabCut,
EthoVision,
FIS_scads
Obesity
analysis,
learning,
topic_lifescienceBehavioralDeepDeepLabCut,EthoVision,FIS_scadsObesityanalysis,learning,
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1CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation
P. Vasudevan, M. Wolfien, H. Lemcke, {. Lang, A. Skorska, R. Gaebel, A. Galow, D. Koczan, T. Lindner, W. Bergmann and 6 other author(s). Genome medicine, (Aug 10, 2023)Publisher Copyright: © 2023, BioMed Central Ltd., part of Springer Nature..
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Animals,
C57BL,
Cardiac/metabolism,
Cell
FIS_scads
Immunocompromised,
Inbred
Infarction,
Machine
Macrophages,
Macrophages/metabolism,
Mice,
Monocytes/metabolism
Myocardial
Myocytes,
Single-cell,
infarction,
learning,
therapy,
topic_lifescienceAnimals,C57BL,Cardiac/metabolism,CellFIS_scadsImmunocompromised,InbredInfarction,MachineMacrophages,Macrophages/metabolism,Mice,Monocytes/metabolismMyocardialMyocytes,Single-cell,infarction,learning,therapy,
(0)
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1Ten Topics to Get Started in Medical Informatics Research
M. Wolfien, N. Ahmadi, K. Fitzer, S. Grummt, K. Heine, I. Jung, D. Krefting, A. Kühn, Y. Peng, I. Reinecke and 7 other author(s). Journal of Medical Internet Research, (Jul 24, 2023)Publisher Copyright: ©Markus Wolfien, Najia Ahmadi, Kai Fitzer, Sophia Grummt, Kilian-Ludwig Heine, Ian-C Jung, Dagmar Krefting, Andreas Kühn, Yuan Peng, Ines Reinecke, Julia Scheel, Tobias Schmidt, Paul Schmücker, Christina Schüttler, Dagmar Waltemath, Michele Zoch, Martin Sedlmayr..
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topic_lifescience
Algorithms,
Clinical
Curriculum,
Digital
FIS_scads
Germany,
Health
Humans,
Informatics,
Interdisciplinary
Medical
Research
clinical
communication,
data,
digital
health
health,
informatics
informatics,
interdisciplinary
medical
research
topic_lifescienceAlgorithms,ClinicalCurriculum,DigitalFIS_scadsGermany,HealthHumans,Informatics,InterdisciplinaryMedicalResearchclinicalcommunication,data,digitalhealthhealth,informaticsinformatics,interdisciplinarymedicalresearch
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2Artificial Intelligence Reporting Guidelines' Adherence in Nephrology for Improved Research and Clinical Outcomes
{. Salybekov, M. Wolfien, W. Hahn, S. Hidaka, and S. Kobayashi. Biomedicines, (Mar 7, 2024)Publisher Copyright: © 2024 by the authors..
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1How to customize common data models for rare diseases: an OMOP-based implementation and lessons learned
N. Ahmadi, M. Zoch, O. Guengoeze, C. Facchinello, A. Mondorf, K. Stratmann, K. Musleh, H. Erasmus, J. Tchertov, R. Gebler and 13 other author(s). Orphanet journal of rare diseases, (Aug 14, 2024)© 2024. The Author(s)..
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topic_lifescience
Diseases
FIS_scads
Humans,
Rare
topic_lifescienceDiseasesFIS_scadsHumans,Rare
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1Methods Used in the Development of Common Data Models for Health Data: Scoping Review
N. Ahmadi, M. Zoch, P. Kelbert, R. Noll, J. Schaaf, M. Wolfien, and M. Sedlmayr. JMIR medical informatics, (Aug 3, 2023)Publisher Copyright: © 2023 The British Editorial..
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(0)
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1Synthetic Data Generation in Hematology - Paving the Way for OMOP and FHIR Integration
W. Hahn, N. Ahmadi, K. Hoffmann, J. Eckardt, M. Sedlmayr, and M. Wolfien. Studies in health technology and informatics, (Aug 22, 2024)Publisher Copyright: © 2024 The Authors..
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topic_lifescience
Acute,
Assessment,
Care
Electronic
FIS_scads
Health
Hematology,
Humans,
Information
Interoperability,
Leukemia,
Myeloid,
Outcome
Records,
topic_lifescienceAcute,Assessment,CareElectronicFIS_scadsHealthHematology,Humans,InformationInteroperability,Leukemia,Myeloid,OutcomeRecords,
(0)
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1Challenges and applications in generative AI for clinical tabular data in physiology
C. Umesh, M. Mahendra, S. Bej, O. Wolkenhauer, and M. Wolfien. Pflügers Archiv : European journal of physiology, (Oct 17, 2024)© 2024. The Author(s)..
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imported
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(0)
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1Netrank: network-based approach for biomarker discovery
A. Al-Fatlawi, E. Rusadze, A. Shmelkin, N. Malekian, C. Ozen, C. Pilarsky, and M. Schroeder. BMC bioinformatics, (Jul 29, 2023)Publisher Copyright: © 2023, The Author(s)..
a month ago by @scadsfct
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topic_lifescience
Algorithms,
Area
Biomedical
Curve,
Disease
FIS_scads
Gene
Humans,
Library
Progression,
Research,
Under
topic_lifescienceAlgorithms,AreaBiomedicalCurve,DiseaseFIS_scadsGeneHumans,LibraryProgression,Research,Under
(0)
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1Word-based GWAS harnesses the rich potential of genomic data for E. coli quinolone resistance
N. Malekian, S. Sainath, A. Al-Fatlawi, and M. Schroeder. Frontiers in microbiology, (2023)Copyright © 2023 Malekian, Sainath, Al-Fatlawi and Schroeder..
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imported
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1Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation
J. Zackova Suchanova, G. Bilcke, B. Romanowska, A. Fatlawi, M. Pippel, A. Skeffington, M. Schroeder, W. Vyverman, K. Vandepoele, N. Kröger and 1 other author(s). New Phytologist, 240 (2): 770--783 (Aug 7, 2023)Publisher Copyright: © 2023 The Authors New Phytologist © 2023 New Phytologist Foundation. We acknowledge the support of the Core Facility Mass Spectrometry & Proteomics, Light Microscopy Facility and the Dresden‐concept Genome Center of the Technology Platform of the Center for Molecular and Cellular Bioengineering (CMCB) of the TU Dresden..
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Adhesives/metabolism,
Bacteria
Biofilms,
Diatoms/metabolism,
FIS_scads
Gene
Horizontal,
Transfer,
topic_lifescienceAdhesives/metabolism,BacteriaBiofilms,Diatoms/metabolism,FIS_scadsGeneHorizontal,Transfer,
(0)
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1Is Protein BLAST a thing of the past?
A. Al-Fatlawi, M. Menzel, and M. Schroeder. Nature communications, (Dec 11, 2023)
a month ago by @scadsfct
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topic_lifescience
Databases,
FIS_scads
Protein,
Proteins/genetics
topic_lifescienceDatabases,FIS_scadsProtein,Proteins/genetics
(0)
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1The Rad52 SSAP superfamily and new insight into homologous recombination
A. Al-Fatlawi, M. Schroeder, and {. Stewart. Communications biology, (Jan 23, 2023)Funding Information: We gratefully acknowledge support from ZIH of TU Dresden and the BMBF Project scads.ai..
a month ago by @scadsfct
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topic_lifescience
DNA
FIS_scads
Homologous
Protein/genetics
Rad52
Recombination
Recombination,
Repair
and
topic_lifescienceDNAFIS_scadsHomologousProtein/geneticsRad52RecombinationRecombination,Repairand
(0)
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1Spontaneous flow instabilities of active polar fluids in three dimensions
A. Singh, Q. Vagne, F. Jülicher, and {. Sbalzarini. Physical Review Research, (April 2023)Funding Information: Acknowledgments. This work was supported by the Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, funded by the Federal Ministry of Education and Research (BMBF, Bundesministerium für Bildung und Forschung). We thank the Scientific Computing Facility of MPI-CBG and the Center for Information Services and High Performance Computing (ZIH) of TU Dresden for providing the compute resources for the numerical simulations. We thank Philipp Suhrcke (Sbalzarini group) and the anonymous referees for their constructive comments. Publisher Copyright: © 2023 authors. Published by the American Physical Society..
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1Inverse Dirichlet weighting enables reliable training of physics informed neural networks
S. Maddu, D. Sturm, {. Mueller, and {. Sbalzarini. Machine learning: science and technology, (Feb 15, 2022)Funding Information: This work was supported by the German Research Foundation (DFG) – EXC-2068, Cluster of Excellence ‘Physics of Life’, and by the Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, funded by the Federal Ministry of Education and Research (BMBF). The present work was also partly funded by the Center for Advanced Systems Understanding (CASUS), which is financed by Germany’s Federal Ministry of Education and Research (BMBF) and by the Saxon Ministry for Science, Culture and Tourism (SMWK) with tax funds on the basis of the budget approved by the Saxon State Parliament. Publisher Copyright: © 2022 The Author(s). Published by IOP Publishing Ltd..
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ALGORITHM
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active
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forgetting,
gradient
modeling,
multi-objective
multi-scale
networks,
neural
physics-informed
regularization,
training,
turbulence,
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1STENCIL-NET for equation-free forecasting from data
S. Maddu, D. Sturm, {. Cheeseman, {. Müller, and {. Sbalzarini. Scientific reports, (December 2023)Publisher Copyright: © 2023, Springer Nature Limited..
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1A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence
A. Singh, {. Suhrcke, P. Incardona, and {. Sbalzarini. Physics of fluids, (Oct 1, 2023)Publisher Copyright: © 2023 Author(s)..
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1A Unifying Mathematical Definition of Particle Methods
J. Pahlke, and {. Sbalzarini. IEEE open journal of the computer society : an open access publication of the IEEE Computer Society, (2023)Publisher Copyright: © 2020 IEEE..
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Algorithmics,
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algorithms,
definition,
engineering
formal
mesh-free
methods,
parallelization,
particle
simulation
software
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1Learning deterministic hydrodynamic equations from stochastic active particle dynamics
S. Maddu, Q. Vagne, and {. Sbalzarini. WorkingPaper, (Jan 21, 2022)
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cond-mat.soft,
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physics.data-an
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1Parallel Discrete Convolutions on Adaptive Particle Representations of Images
J. Jonsson, {. Cheeseman, S. Maddu, K. Gonciarz, and {. Sbalzarini. IEEE Transactions on Image Processing, (Jan 1, 2022)Publisher Copyright: © 1992-2012 IEEE..
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Convolution,
Data
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Image
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1A C++ Library for Memory Layout and Performance Portability of Scientific Applications
P. Incardona, A. Gupta, S. Yaskovets, and {. Sbalzarini. Euro-Par 2022, page 109--120. Germany, Springer Science and Business Media B.V., (2023)Publisher Copyright: © 2023, The Author(s), under exclusive license to Springer Nature Switzerland AG.; 28th International European Conference on Parallel and Distributed Computing , Euro-Par 2022 ; Conference date: 22-08-2022 Through 26-08-2022.
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C++
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GPU,
algorithms,
generic
layout,
memory
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performance
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tuples,
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1Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems
S. Perez, S. Maddu, {. Sbalzarini, and P. Poncet. Journal of computational physics, (Oct 15, 2023)Publisher Copyright: © 2023 The Author(s).
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Adaptive
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Intelligence,
Monte
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Quantification
Uncertainty
learning,
networks,
neural
physics-informed
training,
weight
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1Stability selection enables robust learning of differential equations from limited noisy data
S. Maddu, {. Cheeseman, {. Sbalzarini, and {. Müller. Proceedings of the Royal Society of London : Series A, Mathematical, physical and engineering sciences, (June 2022)Publisher Copyright: © 2022 Royal Society Publishing. All rights reserved..
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PAR
differential
equations,
learning
learning,
machine
proteins,
regression,
selection,
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theory
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