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1Chemically inspired Erd\Hos-Rényi oriented hypergraphs
A. Garcia-Chung, M. Bermúdez-Montaña, P. Stadler, J. Jost, and G. Restrepo. (2023)
2 months ago by @scadsfct
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1Tailored machine learning models for functional RNA detection in genome-wide screens (Version 1)
C. Klapproth, S. Zöztsche, F. Kühnl, J. Fallmann, P. Stadler, and S. Findeiß. https://doi.org/10.5281/zenodo.8120827, (July 2023)Accessed on YYYY-MM-DD..
2 months ago by @scadsfct
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1IsUMap: Manifold Learning and Data Visualization leveraging Vietoris-Rips filtrations
L. Barth, Fatemeh, Fahimi, P. Joharinad, J. Jost, and J. Keck. (2024)
2 months ago by @scadsfct
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1Geometry of Data
P. Joharinad, and J. Jost. (2022)
2 months ago by @scadsfct
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1Fuzzy simplicial sets and their application to geometric data analysis
L. Barth, Fatemeh, Fahimi, P. Joharinad, J. Jost, J. Keck, and T. Mikhail. (2024)
2 months ago by @scadsfct
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1Mathematical principles of topological and geometric data analysis
P. Joharinad, and J. Jost. Mathematics of data Springer, Cham, (2023)
2 months ago by @scadsfct
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1Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
A. Singh, I. Sbalzarini, and A. Obeidat. Computers & Fluids, (December 2023)
2 months ago by @scadsfct
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1Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality
J. Tiemann, M. McGinity, I. Sbalzarini, and U. Günther. Extended Abstracts of the 2024 CHI Conference on Human Factors in Computing Systems, New York, NY, USA, Association for Computing Machinery, (2024)
2 months ago by @scadsfct
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control,
human-computer
interaction,
microscope
reality,
virtual
visualization
topic_lifesciencecontrol,human-computerinteraction,microscopereality,virtualvisualization
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1Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana
J. Corona-Gomez, E. Coss-Navarrete, I. Garcia-Lopez, C. Klapproth, J. Pérez-Patiño, and S. Fernandez-Valverde. Scientific Reports, 12 (1): 14063 (August 2022)
2 months ago by @scadsfct
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1Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter
D. del Alamo, L. DeSousa, R. Nair, S. Rahman, J. Meiler, and H. Mchaourab. Proceedings of the National Academy of Sciences, (August 2022)
2 months ago by @scadsfct
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1Towards the interpretability of deep learning models for multi-modal neuroimaging: Finding structural changes of the ageing brain
S. Hofmann, F. Beyer, S. Lapuschkin, O. Goltermann, M. Loeffler, K. M√ºller, A. Villringer, W. Samek, and A. Witte. NeuroImage, (2022)
2 months ago by @scadsfct
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topic_lifescience
Ageing,
Brain-age,
Cardiovascular
Explainable
Structural
a.i.,
deep
factors,
learning
mri,
risk
topic_neuroinspiredtopic_lifescienceAgeing,Brain-age,CardiovascularExplainableStructurala.i.,deepfactors,learningmri,risk
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1Small integral membrane protein 10 like 1 enhances differentiation of adipose progenitor cells
M. Nebe, S. Kehr, S. Schmitz, J. Breitfeld, J. Lorenz, D. Le Duc, P. Stadler, J. Meiler, W. Kiess, A. Garten and 1 other author(s). Biochemical and Biophysical Research Communications, (March 2022)
2 months ago by @scadsfct
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1The Leipzig Health Atlas - An open platform to present, archive and share bio-medical data, analyses and models online
T. Kirsten, F. Meineke, H. Löffler-Wirth, A. Uciteli, C. Beger, S. Stäubert, M. Löbe, R. Hänsel, F. Rauscher, J. Schuster and 9 other author(s). Methods of Information in Medicine, (August 2022)
2 months ago by @scadsfct
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1Facts and Hopes on the Use of Artificial Intelligence for Predictive Immunotherapy Biomarkers in Cancer
N. Laleh, M. Ligero, R. Perez-Lopez, and J. Kather. Clinical Cancer Research, (September 2022)
2 months ago by @scadsfct
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1Towards generalizable predictions for G protein-coupled receptor variant expression
C. Kuntz, H. Woods, A. McKee, N. Zelt, J. Mendenhall, J. Meiler, and J. Schlebach. Biophysical Journal, 121 (14): 2712--2720 (2022)
2 months ago by @scadsfct
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2An active learning framework improves tumor variant interpretation
A. Blee, B. Li, T. Pecen, J. Meiler, Z. Nagel, J. Capra, and W. Chazin. Cancer Res., 82 (15): 2704--2715 (August 2022)
2 months ago by @scadsfct
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1Computational structure prediction for antibody-antigen complexes from hydrogen-deuterium exchange mass spectrometry: Challenges and outlook
M. Tran, C. Schoeder, K. Schey, and J. Meiler. Front. Immunol., (May 2022)
2 months ago by @scadsfct
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topic_lifescience
(HDX-MS);
antibody-antigen
biology;
docking;
epitope-paratope
exchange
hydrogen-deuterium
identification;
integrative
interaction;
mass
modeling
protein-protein
spectrometry
structural
structure
topic_lifescience(HDX-MS);antibody-antigenbiology;docking;epitope-paratopeexchangehydrogen-deuteriumidentification;integrativeinteraction;massmodelingprotein-proteinspectrometrystructuralstructure
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1Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by de novo KCNC2 variants
S. Mukherjee, T. Cassini, N. Hu, T. Yang, B. Li, W. Shen, C. Moth, D. Rinker, J. Sheehan, J. Cogan and 8 other author(s). Human Genetics and Genomics Advances, 3 (4): 100131 (2022)
2 months ago by @scadsfct
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DEE,
Diseases
KCNC2,
Network,
Undiagnosed
and
biology,
developmental
disease
dynamics
electrophysiology,
encephalopathy,
epileptic
interpretation,
molecular
personalized
rare
simulations,
structural
variant
variant,
topic_lifescienceDEE,DiseasesKCNC2,Network,Undiagnosedandbiology,developmentaldiseasedynamicselectrophysiology,encephalopathy,epilepticinterpretation,molecularpersonalizedraresimulations,structuralvariantvariant,
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2Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods
M. Fischer, J. Crowe, and J. Meiler. PLOS Computational Biology, (December 2022)
2 months ago by @scadsfct
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1Including glutamine in a resource allocation model of energy metabolism in cancer and yeast cells
J. Ewald, Z. He, W. Dimitriew, and S. Schuster. npj Systems Biology and Applications, (July 2024)
2 months ago by @scadsfct
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1Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data
A. Gupta, P. Incardona, P. Hunt, G. Reina, S. Frey, S. Gumhold, U. Günther, and I. Sbalzarini. arXiv preprint arXiv:2206.14503, (2022)
3 months ago by @scadsfct
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1Tailored machine learning models for functional RNA detection in genome-wide screens
C. Klapproth, S. Zöztsche, F. Kühnl, J. Fallmann, P. Stadler, and S. Findeiß. (September 2022)
3 months ago by @scadsfct
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1Comparison of Atom Maps
M. González Laffitte, N. Beier, N. Domschke, and P. Stadler. MATCH: Comm. Math. Comp. Chem., (2023)
3 months ago by @scadsfct
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1Medical domain knowledge in domain-agnostic generative AI
J. Kather, N. Ghaffari Laleh, S. Foersch, and D. Truhn. NPJ Digit. Med., 5 (1): 90 (July 2022)
3 months ago by @scadsfct
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1Deep learning-based classification of kidney transplant pathology: a retrospective, multicentre, proof-of-concept study
J. Kers, R. Bülow, B. Klinkhammer, G. Breimer, F. Fontana, A. Abiola, R. Hofstraat, G. Corthals, H. Peters-Sengers, S. Djudjaj and 13 other author(s). Lancet Digit. Health, 4 (1): e18--e26 (January 2022)
3 months ago by @scadsfct
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1Weakly supervised end-to-end artificial intelligence in gastrointestinal endoscopy
L. Buendgens, D. Cifci, N. Ghaffari Laleh, M. van Treeck, M. Koenen, H. Zimmermann, T. Herbold, T. Lux, A. Hann, C. Trautwein and 1 other author(s). Sci. Rep., 12 (1): 4829 (March 2022)
3 months ago by @scadsfct
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1Classical mathematical models for prediction of response to chemotherapy and immunotherapy
N. Ghaffari Laleh, C. Loeffler, J. Grajek, K. Stanková, A. Pearson, H. Muti, C. Trautwein, H. Enderling, J. Poleszczuk, and J. Kather. PLoS Comput. Biol., 18 (2): e1009822 (February 2022)
3 months ago by @scadsfct
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1Clinical relevance of biomarkers in cholangiocarcinoma: critical revision and future directions
R. Macias, V. Cardinale, T. Kendall, M. Avila, M. Guido, C. Coulouarn, C. Braconi, A. Frampton, J. Bridgewater, D. Overi and 11 other author(s). Gut, (May 2022)
3 months ago by @scadsfct
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1The influence of computer-aided polyp detection systems on reaction time for polyp detection and eye gaze
J. Troya, D. Fitting, M. Brand, B. Sudarevic, J. Kather, A. Meining, and A. Hann. Endoscopy, 54 (10): 1009--1014 (October 2022)
3 months ago by @scadsfct
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1Second-line therapy with nivolumab plus ipilimumab for older patients with oesophageal squamous cell cancer (RAMONA): a multicentre, open-label phase 2 trial
M. Ebert, N. Meindl-Beinker, T. Gutting, M. Maenz, J. Betge, N. Schulte, T. Zhan, P. Weidner, E. Burgermeister, R. Hofheinz and 12 other author(s). Lancet Healthy Longev., 3 (6): e417--e427 (June 2022)
3 months ago by @scadsfct
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1Deep learning can predict survival directly from histology in clear cell renal cell carcinoma
F. Wessels, M. Schmitt, E. Krieghoff-Henning, J. Kather, M. Nientiedt, M. Kriegmair, T. Worst, M. Neuberger, M. Steeg, Z. Popovic and 7 other author(s). PLoS One, 17 (8): e0272656 (August 2022)
3 months ago by @scadsfct
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1Spatial structure governs the mode of tumour evolution
R. Noble, D. Burri, C. Le Sueur, J. Lemant, Y. Viossat, J. Kather, and N. Beerenwinkel. Nat. Ecol. Evol., 6 (2): 207--217 (February 2022)
3 months ago by @scadsfct
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1Swarm learning for decentralized artificial intelligence in cancer histopathology
O. Saldanha, P. Quirke, N. West, J. James, M. Loughrey, H. Grabsch, M. Salto-Tellez, E. Alwers, D. Cifci, N. Ghaffari Laleh and 17 other author(s). Nat. Med., 28 (6): 1232--1239 (June 2022)
3 months ago by @scadsfct
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1Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review
L. Schneider, E. Krieghoff-Henning, S. Laiouar-Pedari, S. Kuntz, A. Hekler, J. Kather, T. Gaiser, S. Fröhling, and T. Brinker. Eur. J. Cancer, (September 2022)
3 months ago by @scadsfct
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1Diagnostic performance of artificial intelligence for histologic melanoma recognition compared to 18 international expert pathologists
T. Brinker, M. Schmitt, E. Krieghoff-Henning, R. Barnhill, H. Beltraminelli, S. Braun, R. Carr, M. Fernandez-Figueras, G. Ferrara, S. Fraitag and 18 other author(s). J. Am. Acad. Dermatol., 86 (3): 640--642 (March 2022)
3 months ago by @scadsfct
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1Artificial intelligence in Barrett's oesophagus and the need for shared and combined data
R. Schmitz, and J. Kather. United European Gastroenterol. J., 10 (6): 525--527 (July 2022)
3 months ago by @scadsfct
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1Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis
B. Martinez-Vega, M. Tkachenko, M. Matkabi, S. Ortega, H. Fabelo, F. Balea-Fernandez, M. Salvia, E. Torti, F. Leporati, G. Callico and 1 other author(s). Sensors, 22 (22): 8917 (2022)
3 months ago by @scadsfct
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1PlaceWaters: Real-time, explicit interface water sampling during Rosetta ligand docking
S. Smith, L. Shub, and J. Meiler. PLoS One, 17 (5): e0269072 (May 2022)
3 months ago by @scadsfct
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1Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals
N. Bozhanova, A. Flyak, B. Brown, S. Ruiz, J. Salas, S. Rho, R. Bombardi, L. Myers, C. Soto, J. Bailey and 3 other author(s). Nat. Commun., 13 (1): 3178 (June 2022)
3 months ago by @scadsfct
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1Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region
C. Schoeder, P. Gilchuk, A. Sangha, K. Ledwitch, D. Malherbe, X. Zhang, E. Binshtein, L. Williamson, C. Martina, J. Dong and 10 other author(s). PLoS Pathog., 18 (5): e1010518 (May 2022)
3 months ago by @scadsfct
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1Predicting the functional impact of KCNQ1 variants with artificial neural networks
S. Phul, G. Kuenze, C. Vanoye, C. Sanders, A. George, Jr, and J. Meiler. PLoS Comput. Biol., 18 (4): e1010038 (April 2022)
3 months ago by @scadsfct
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1Machine learning for rupture risk prediction of intracranial aneurysms: Challenging the PHASES score in geographically constrained areas
G. Walther, C. Martin, A. Haase, U. Nestler, and S. Schob. Symmetry, Special Issue: Neuroscience and Molecular Sciences, 14 (5): 943 (May 2022)
3 months ago by @scadsfct
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1Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana
J. Corona-Gomez, E. Coss-Navarrete, I. Garcia-Lopez, C. Klapproth, J. Pérez-Patiño, and S. Fernandez-Valverde. Sci. Rep., 12 (1): 14063 (August 2022)
3 months ago by @scadsfct
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1Grimjack at Touché 2022: Axiomatic Re-ranking and Query Reformulation
{. Reimer, J. Huck, and A. Bondarenko. Working Notes Papers of the CLEF 2022 Evaluation Labs, volume 3180 of CEUR Workshop Proceedings, (September 2022)
3 months ago by @scadsfct
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1Beyond the Imitation Game: Quantifying and extrapolating the capabilities of language models
A. Srivastava, A. Rastogi, A. Rao, A. Shoeb, A. Abid, A. Fisch, A. Brown, A. Santoro, A. Gupta, A. Garriga-Alonso and 435 other author(s). (2022)
3 months ago by @scadsfct
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1Visual Web Archive Quality Assessment
T. Elstner, J. Kiesel, L. Meyer, M. Martius, S. Schmidt, B. Stein, and M. Potthast. Linking Theory and Practice of Digital Libraries, Springer International Publishing, Cham, (2022)
3 months ago by @scadsfct
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1Chasing Streams with Existential Rules
J. Urbani, M. Krötzsch, and T. Eiter. Proceedings of the 19th International Conference on Principles of Knowledge Representation and Reasoning, page 415--419. (August 2022)
3 months ago by @scadsfct
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1Automated algorithm selection in single-objective continuous optimization: A comparative study of deep learning and landscape analysis methods
R. Prager, M. Seiler, H. Trautmann, and P. Kerschke. Lecture Notes in Computer Science, Springer International Publishing, Cham, (2022)
3 months ago by @scadsfct
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1A collection of deep learning-based feature-free approaches for characterizing single-objective continuous fitness landscapes
M. Seiler, R. Prager, P. Kerschke, and H. Trautmann. Proceedings of the Genetic and Evolutionary Computation Conference, New York, NY, USA, ACM, (July 2022)
3 months ago by @scadsfct
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1Freiheit und Kalkül. Die Politik der Algorithmen
S. Müller-Mall. (October 2020)
3 months ago by @scadsfct
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