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1A Distributed Algebra System for Time Integration on Parallel Computers
A. Singh, L. Kraatz, P. Incardona, and I. Sbalzarini. CoRR, (2023)
11 months ago by @scadsfct
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1Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology
K. Soans, A. Ramos, J. Sidhaye, A. Krishna, A. Solomatina, K. Hoffmann, R. Schl��ler, J. Guck, I. Sbalzarini, C. Modes and 1 other author(s). Current Biology, 32 (22): 4817--4831.e9 (2022)
11 months ago by @scadsfct
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1Variational inference accelerates accurate DNA mixture deconvolution
M. Susik, and I. Sbalzarini. Forensic Science International: Genetics, (July 2023)
11 months ago by @scadsfct
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1Proven Distributed Memory Parallelization of Particle Methods
J. Pahlke, and I. Sbalzarini. (Sep 18, 2024)
11 months ago by @scadsfct
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1Hamiltonian Monte Carlo with strict convergence criteria reduces run-to-run variability in forensic DNA mixture deconvolution
M. Susik, H. Schönborn, and I. Sbalzarini. Forensic Science International: Genetics, (September 2022)
11 months ago by @scadsfct
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1A high-order fully Lagrangian particle level-set method for dynamic surfaces
L. Schulze, S. Veettil, and I. Sbalzarini. CoRR, (2023)
11 months ago by @scadsfct
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1A Gaussian jump process formulation of the reaction�diffusion master equation enables faster exact stochastic simulations
T. Subic, and I. Sbalzarini. The Journal of Chemical Physics, (November 2022)
11 months ago by @scadsfct
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1A portable C++ library for memory and compute abstraction on multi?core CPUs and GPUs
P. Incardona, A. Gupta, S. Yaskovets, and I. Sbalzarini. Concurrency and Computation: Practice and Experience, (July 2023)
11 months ago by @scadsfct
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1Quantifying Molecular Dynamics within Complex Cellular Morphologies using LLSM?FRAP (Small Methods 6/2022)
H. Colin?York, J. Heddleston, E. Wait, N. Karedla, M. deSantis, S. Khuon, T. Chew, I. Sbalzarini, and M. Fritzsche. Small Methods, (June 2022)
11 months ago by @scadsfct
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1Computational Power of Particle Methods
J. Pahlke, and I. Sbalzarini. CoRR, (2023)
11 months ago by @scadsfct
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1Analysis of the Hamiltonian Monte Carlo genotyping algorithm on PROVEDIt mixtures including a novel precision benchmark
M. Susik, and I. Sbalzarini. Forensic Science International: Genetics, (2023)
11 months ago by @scadsfct
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1Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates
A. Gupta, U. Günther, P. Incardona, G. Reina, S. Frey, S. Gumhold, and I. Sbalzarini. 2023 IEEE 16th Pacific Visualization Symposium (PacificVis), 19, page 61�70. IEEE, (April 2023)
11 months ago by @scadsfct
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1Geometry of Data
P. Joharinad, and J. Jost. (2022)
12 months ago by @scadsfct
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1Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality
J. Tiemann, M. McGinity, I. Sbalzarini, and U. Günther. Extended Abstracts of the 2024 CHI Conference on Human Factors in Computing Systems, New York, NY, USA, Association for Computing Machinery, (2024)
12 months ago by @scadsfct
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1Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
A. Singh, I. Sbalzarini, and A. Obeidat. Computers & Fluids, (December 2023)
12 months ago by @scadsfct
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1Transcriptome-guided annotation and functional classification of long non-coding RNAs in Arabidopsis thaliana
J. Corona-Gomez, E. Coss-Navarrete, I. Garcia-Lopez, C. Klapproth, J. Pérez-Patiño, and S. Fernandez-Valverde. Scientific Reports, 12 (1): 14063 (August 2022)
12 months ago by @scadsfct
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1IsUMap: Manifold Learning and Data Visualization leveraging Vietoris-Rips filtrations
L. Barth, Fatemeh, Fahimi, P. Joharinad, J. Jost, and J. Keck. (2024)
12 months ago by @scadsfct
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1Fuzzy simplicial sets and their application to geometric data analysis
L. Barth, Fatemeh, Fahimi, P. Joharinad, J. Jost, J. Keck, and T. Mikhail. (2024)
12 months ago by @scadsfct
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1Towards generalizable predictions for G protein-coupled receptor variant expression
C. Kuntz, H. Woods, A. McKee, N. Zelt, J. Mendenhall, J. Meiler, and J. Schlebach. Biophysical Journal, 121 (14): 2712--2720 (2022)
12 months ago by @scadsfct
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1Towards the interpretability of deep learning models for multi-modal neuroimaging: Finding structural changes of the ageing brain
S. Hofmann, F. Beyer, S. Lapuschkin, O. Goltermann, M. Loeffler, K. M√ºller, A. Villringer, W. Samek, and A. Witte. NeuroImage, (2022)
12 months ago by @scadsfct
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1Computational structure prediction for antibody-antigen complexes from hydrogen-deuterium exchange mass spectrometry: Challenges and outlook
M. Tran, C. Schoeder, K. Schey, and J. Meiler. Front. Immunol., (May 2022)
12 months ago by @scadsfct
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1Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter
D. del Alamo, L. DeSousa, R. Nair, S. Rahman, J. Meiler, and H. Mchaourab. Proceedings of the National Academy of Sciences, (August 2022)
12 months ago by @scadsfct
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1Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by de novo KCNC2 variants
S. Mukherjee, T. Cassini, N. Hu, T. Yang, B. Li, W. Shen, C. Moth, D. Rinker, J. Sheehan, J. Cogan and 8 other author(s). Human Genetics and Genomics Advances, 3 (4): 100131 (2022)
12 months ago by @scadsfct
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1Facts and Hopes on the Use of Artificial Intelligence for Predictive Immunotherapy Biomarkers in Cancer
N. Laleh, M. Ligero, R. Perez-Lopez, and J. Kather. Clinical Cancer Research, (September 2022)
12 months ago by @scadsfct
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1The Leipzig Health Atlas - An open platform to present, archive and share bio-medical data, analyses and models online
T. Kirsten, F. Meineke, H. Löffler-Wirth, A. Uciteli, C. Beger, S. Stäubert, M. Löbe, R. Hänsel, F. Rauscher, J. Schuster and 9 other author(s). Methods of Information in Medicine, (August 2022)
12 months ago by @scadsfct
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1Small integral membrane protein 10 like 1 enhances differentiation of adipose progenitor cells
M. Nebe, S. Kehr, S. Schmitz, J. Breitfeld, J. Lorenz, D. Le Duc, P. Stadler, J. Meiler, W. Kiess, A. Garten and 1 other author(s). Biochemical and Biophysical Research Communications, (March 2022)
12 months ago by @scadsfct
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1Including glutamine in a resource allocation model of energy metabolism in cancer and yeast cells
J. Ewald, Z. He, W. Dimitriew, and S. Schuster. npj Systems Biology and Applications, (July 2024)
12 months ago by @scadsfct
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1Modern Talking in Key Point Analysis: Key Point Matching using Pretrained Encoders
J. Reimer, T. Luu, M. Henze, and Y. Ajjour. Proceedings of the 8th Workshop on Argument Mining, Association for Computational Linguistics, (2021)
a year ago by @scadsfct
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1Description Logics that Count, and What They Can and Cannot Count (Extended Abstract)
F. Baader, and F. De Bortoli. Proceedings of the 33rd International Workshop on Description Logics (DL'20), volume 2663 of CEUR Workshop Proceedings, Online, CEUR-WS, (2020)
a year ago by @scadsfct
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1Visual Web Archive Quality Assessment
T. Elstner, J. Kiesel, L. Meyer, M. Martius, S. Schmidt, B. Stein, and M. Potthast. Linking Theory and Practice of Digital Libraries, volume 13541 of Lecture notes in computer science, Springer International Publishing, Cham, (2022)
a year ago by @scadsfct
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1Digitale Transformationen von Öffentlichkeit. Ausgangspunkte und Horizonte einer transdisziplinären Perspektivbildung
J. Kruse, and S. Müller-Mall. Digitale Transformationen der Öffentlichkeit, Velbrück Wissenschaft, (2020)
a year ago by @scadsfct
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1Distance multivariance: New dependence measures for random vectors
B. Böttcher, M. Keller-Ressel, and R. Schilling. The Annals of Statistics, 47 (5): 2757--2789 (October 2019)
a year ago by @scadsfct
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1Prediction of amphipathic helix-membrane interactions with Rosetta
A. Gulsevin, and J. Meiler. PLoS Comput. Biol., 17 (3): e1008818 (March 2021)
a year ago by @scadsfct
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1Diagnostic performance of artificial intelligence for histologic melanoma recognition compared to 18 international expert pathologists
T. Brinker, M. Schmitt, E. Krieghoff-Henning, R. Barnhill, H. Beltraminelli, S. Braun, R. Carr, M. Fernandez-Figueras, G. Ferrara, S. Fraitag and 18 other author(s). J. Am. Acad. Dermatol., 86 (3): 640--642 (March 2022)
a year ago by @scadsfct
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1Clinical relevance of biomarkers in cholangiocarcinoma: critical revision and future directions
R. Macias, V. Cardinale, T. Kendall, M. Avila, M. Guido, C. Coulouarn, C. Braconi, A. Frampton, J. Bridgewater, D. Overi and 11 other author(s). Gut, (May 2022)
a year ago by @scadsfct
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1Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review
L. Schneider, E. Krieghoff-Henning, S. Laiouar-Pedari, S. Kuntz, A. Hekler, J. Kather, T. Gaiser, S. Fröhling, and T. Brinker. Eur. J. Cancer, (September 2022)
a year ago by @scadsfct
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1Swarm learning for decentralized artificial intelligence in cancer histopathology
O. Saldanha, P. Quirke, N. West, J. James, M. Loughrey, H. Grabsch, M. Salto-Tellez, E. Alwers, D. Cifci, N. Ghaffari Laleh and 17 other author(s). Nat. Med., 28 (6): 1232--1239 (June 2022)
a year ago by @scadsfct
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1Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume
D. Vojinovic, H. Adams, X. Jian, Q. Yang, A. Smith, J. Bis, A. Teumer, M. Scholz, N. Armstrong, E. Hofer and 81 other author(s). Nat. Commun., 9 (1): 3945 (September 2018)
a year ago by @scadsfct
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1Enhancing resilience of deep learning networks by means of transferable adversaries
M. Seiler, H. Trautmann, and P. Kerschke. 2020 International Joint Conference on Neural Networks (IJCNN), IEEE, (July 2020)
a year ago by @scadsfct
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1Spatial structure governs the mode of tumour evolution
R. Noble, D. Burri, C. Le Sueur, J. Lemant, Y. Viossat, J. Kather, and N. Beerenwinkel. Nat. Ecol. Evol., 6 (2): 207--217 (February 2022)
a year ago by @scadsfct
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1Rosetta design with co-evolutionary information retains protein function
S. Schmitz, M. Ertelt, R. Merkl, and J. Meiler. PLoS Comput. Biol., 17 (1): e1008568 (January 2021)
a year ago by @scadsfct
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1The influence of computer-aided polyp detection systems on reaction time for polyp detection and eye gaze
J. Troya, D. Fitting, M. Brand, B. Sudarevic, J. Kather, A. Meining, and A. Hann. Endoscopy, 54 (10): 1009--1014 (October 2022)
a year ago by @scadsfct
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1Second-line therapy with nivolumab plus ipilimumab for older patients with oesophageal squamous cell cancer (RAMONA): a multicentre, open-label phase 2 trial
M. Ebert, N. Meindl-Beinker, T. Gutting, M. Maenz, J. Betge, N. Schulte, T. Zhan, P. Weidner, E. Burgermeister, R. Hofheinz and 12 other author(s). Lancet Healthy Longev., 3 (6): e417--e427 (June 2022)
a year ago by @scadsfct
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1Deep learning can predict survival directly from histology in clear cell renal cell carcinoma
F. Wessels, M. Schmitt, E. Krieghoff-Henning, J. Kather, M. Nientiedt, M. Kriegmair, T. Worst, M. Neuberger, M. Steeg, Z. Popovic and 7 other author(s). PLoS One, 17 (8): e0272656 (August 2022)
a year ago by @scadsfct
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1Weakly supervised end-to-end artificial intelligence in gastrointestinal endoscopy
L. Buendgens, D. Cifci, N. Ghaffari Laleh, M. van Treeck, M. Koenen, H. Zimmermann, T. Herbold, T. Lux, A. Hann, C. Trautwein and 1 other author(s). Sci. Rep., 12 (1): 4829 (March 2022)
a year ago by @scadsfct
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1Classical mathematical models for prediction of response to chemotherapy and immunotherapy
N. Ghaffari Laleh, C. Loeffler, J. Grajek, K. Stanková, A. Pearson, H. Muti, C. Trautwein, H. Enderling, J. Poleszczuk, and J. Kather. PLoS Comput. Biol., 18 (2): e1009822 (February 2022)
a year ago by @scadsfct
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1Hyperbolic Busemann Learning with ideal prototypes
M. Atigh, M. Keller-Ressel, and P. Mettes. (2021)
a year ago by @scadsfct
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1Medical domain knowledge in domain-agnostic generative AI
J. Kather, N. Ghaffari Laleh, S. Foersch, and D. Truhn. NPJ Digit. Med., 5 (1): 90 (July 2022)
a year ago by @scadsfct
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1Inter-InnoLab collaboration: An investigation of the diversity and interconnection among Innovation Laboratories
A. Memon, K. Meyer, M. Thieme, and L. Meyer. J. Eng. Technol. Manag., (January 2018)
a year ago by @scadsfct
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1Genetic architecture of subcortical brain structures in 38,851 individuals
C. Satizabal, H. Adams, D. Hibar, C. White, M. Knol, J. Stein, M. Scholz, M. Sargurupremraj, N. Jahanshad, G. Roshchupkin and 279 other author(s). Nat. Genet., 51 (11): 1624--1636 (November 2019)
a year ago by @scadsfct
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