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RosettaCM for antibodies with very long HCDR3s and low template availability, , , , and . Proteins, 89 (11): 1458--1472 (November 2021)Computational structure prediction for antibody-antigen complexes from hydrogen-deuterium exchange mass spectrometry: Challenges and outlook, , , and . Front. Immunol., (May 2022)Self-supervised machine learning methods for protein design improve sampling, but not the identification of high-fitness variants, , , and . (June 2024)Structural comparative modeling of multi-domain F508del CFTR, , , , , , and . Biomolecules, 12 (3): 471 (March 2022)Backbone chemical shift and secondary structure assignments for mouse siderocalin, , , , and . Biomolecular NMR Assignments, 18 (1): 79--84 (2024)Combining Rosetta Sequence Design with Protein Language Model Predictions Using Evolutionary Scale Modeling (ESM) as Restraint, , and . ACS Synthetic Biology, 13 (4): 1085--1092 (2024)Modifying immune responses to adeno-associated virus vectors by capsid engineering, , , , , , , , , and 1 other author(s). Molecular Therapy-Methods & Clinical Development, (2023)Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region, , , , , , , , , and 10 other author(s). PLoS Pathog., 18 (5): e1010518 (May 2022)Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins, , , , , , , and . PLOS Computational Biology, 20 (3): e1011939 (March 2024)