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cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends, , , , and . RNA Biol., 18 (sup2): 818--831 (November 2021)A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set, , and . Algorithms Mol. Biol., 16 (1): 23 (December 2021)PredicTF: a tool to predict bacterial transcription factors in complex microbial communities, , , , , and . (January 2021)Relative Timing Information and Orthology in Evolutionary Scenarios, , , , , and . arXiv, (2022)Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates, , , , , , , , , and 14 other author(s). (August 2021)Weighted Consensus Segmentations, , , , , and . Computation, (2021)Quasi-best match graphs, , , and . Discrete Applied Mathematics, (2023)What makes a reaction network "chemical"?, , and . (2022)Unstable cores are the source of instability in chemical reaction networks, and . Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 480 (2285): 20230694 (2024)Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees, , and . (2021)