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cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends, , , , and . RNA Biol., 18 (sup2): 818--831 (November 2021)A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set, , and . Algorithms Mol. Biol., 16 (1): 23 (December 2021)PredicTF: a tool to predict bacterial transcription factors in complex microbial communities, , , , , and . (January 2021)Orientation of Fitch Graphs and Detection of Horizontal Gene Transfer in Gene Trees, , and . (2021)Unstable cores are the source of instability in chemical reaction networks, and . Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 480 (2285): 20230694 (2024)Quasi-best match graphs, , , and . Discrete Applied Mathematics, (2023)Clusters and Unique Least Common Ancestors in Directed Acyclic Graphs, , , and . (March 2024)Local RNA folding revisited, , , , , , and . Journal of Bioinformatics and Computational Biology, 21 (04): 2350016 (2023)RNA interaction format: a general data format for RNA interactions, , , , , , , and . Bioinformatics, 39 (11): btad665 (2023)Compatibility of partitions with trees, hierarchies and split systems, , and . Discrete Applied Mathematics, (June 2022)