Publications

Sina Mehrdad, Dörthe Handorf, Ines Höschel, Khalil Karami, Johannes Quaas, Sudhakar Dipu, and Christoph Jacobi. Arctic Climate Response to European Radiative Forcing: A Deep Learning Approach. EGUsphere, (2024):1-55, Copernicus Publications, 2024. [PUMA: Yaff topic_earthenvironment]

Thaís Antero de Oliveira, Francisco de Assis de Souza Filho, Gabriela de Azevedo Reis, and Taís Maria Nunes Carvalho. Identification of correlation between residential water demand and average income using the pool regression model: Study case in Fortaleza-Brazil. Water Utility Journal, 2020. [PUMA: zno]

Taís Maria Nunes Carvalho, and Francisco de Assis de Souza Filho. Variational Mode Decomposition Hybridized With Gradient Boost Regression for Seasonal Forecast of Residential Water Demand. Water Resources Management, (35)10:3431-3445, Springer Netherlands, 2021. [PUMA: zno]

Francisco Assis Souza Filho, Ticiana Marinho Carvalho Studart, Joao Dehon Pontes Filho, Eduardo Sávio Passos Rodrigues Martins, Sergio Rodrigues Ayrimoraes, Carlos Alberto Perdigão Pessoa, Larissa Zaira Rafael Rolim, Luiz Martins Araujo Junior, Samiria Maria Oliveira Silva, Taís Maria Nunes Carvalho, and Sandra Helena Silva Aquino. Integrated proactive drought management in hydrosystems and cities: building a nine-step participatory planning methodology. Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, (115)3:2179-2204, Springer & International Society for the Prevention and Mitigation of Natural Hazards, 2023. [PUMA: zno]

Louise Cavalcante, David W Walker, Sarra Kchouk, Germano Ribeiro Neto, Taís Maria Nunes Carvalho, Mariana Madruga de Brito, Wieke Pot, Art Dewulf, and Pieter van Oel. From insufficient rainfall to livelihoods: understanding the cascade of drought impacts and policy implications. EGUsphere, (2024):1-20, Copernicus Publications, 2024. [PUMA: zno]

Julien Lenhardt, Johannes Quaas, Dino Sejdinovic, and Daniel Klocke. Leveraging surface observations and passive satellite retrievals of cloud properties: Applications to cloud type classification and cloud base height retrieval. EGU24-18214Copernicus Meetings, 2024. [PUMA: yaff]

Julien Lenhardt, Johannes Quaas, Dino Sejdinovic, and Daniel Klocke. CloudViT: classifying cloud types in global satellite data and in kilometre-resolution simulations using vision transformers. EGUsphere, (2024):1-31, Copernicus Publications, 2024. [PUMA: yaff]

Maria C Novitasari, Johannes Quaas, and Miguel Rodrigues. ALAS: Active Learning for Autoconversion Rates Prediction from Satellite Data. 3358-3366, PMLR, 2024. [PUMA: Yaff]

Sina Mehrdad, Dörthe Handorf, Ines Höschel, Khalil Karami, Johannes Quaas, Sudhakar Dipu, and Christoph Jacobi. A Physics-informed Deep Learning Based Clustering to Investigate the Impact of Regional European Radiative Forcing on Arctic Climate and Upper Atmospheric Dynamics. EGU24-16391Copernicus Meetings, 2024. [PUMA: yaff]

Karin Mora, Michael Rzanny, Jana Wäldchen, Hannes Feilhauer, Teja Kattenborn, Guido Kraemer, Patrick Mäder, Daria Svidzinska, Sophie Wolf, and Miguel D. Mahecha. Macrophenological dynamics from citizen science plant occurrence data. Methods in Ecology and Evolution, (15)8:1422–1437, Wiley, July 2024. [PUMA: Yaff] URL

Salim Soltani, Olga Ferlian, Nico Eisenhauer, Hannes Feilhauer, and Teja Kattenborn. From simple labels to semantic image segmentation: leveraging citizen science plant photographs for tree species mapping in drone imagery. Biogeosciences, (21)11:2909–2935, Copernicus GmbH, June 2024. [PUMA: xack] URL

David Montero, César Aybar, Chaonan Ji, Guido Kraemer, Maximilian Söchting, Khalil Teber, and Miguel D. Mahecha. On-Demand Earth System Data Cubes. IGARSS 2024 - 2024 IEEE International Geoscience and Remote Sensing Symposium, 7529–7532, IEEE, July 2024. [PUMA: zno] URL

Sophie Wolf, Miguel D. Mahecha, Francesco Maria Sabatini, Christian Wirth, Helge Bruelheide, Jens Kattge, Álvaro Moreno Martínez, Karin Mora, and Teja Kattenborn. Citizen science plant observations encode global trait patterns. Nature Ecology & Evolution, (6)12:1850–1859, Springer Science and Business Media LLC, October 2022. [PUMA: zno] URL

M. D. Mahecha, A. Bastos, F. J. Bohn, N. Eisenhauer, H. Feilhauer, T. Hickler, H. Kalesse‐Los, M. Migliavacca, F. E. L. Otto, J. Peng, S. Sippel, I. Tegen, A. Weigelt, M. Wendisch, C. Wirth, D. Al‐Halbouni, H. Deneke, D. Doktor, S. Dunker, G. Duveiller, A. Ehrlich, A. Foth, A. García‐García, C. A. Guerra, C. Guimarães‐Steinicke, H. Hartmann, S. Henning, H. Herrmann, P. Hu, C. Ji, T. Kattenborn, N. Kolleck, M. Kretschmer, I. Kühn, M. L. Luttkus, M. Maahn, M. Mönks, K. Mora, M. Pöhlker, M. Reichstein, N. Rüger, B. Sánchez‐Parra, M. Schäfer, F. Stratmann, M. Tesche, B. Wehner, S. Wieneke, A. J. Winkler, S. Wolf, S. Zaehle, J. Zscheischler, and J. Quaas. Biodiversity and Climate Extremes: Known Interactions and Research Gaps. Earth’s Future, (12)6American Geophysical Union (AGU), June 2024. [PUMA: zno] URL

Maximilian Söchting, Miguel D. Mahecha, David Montero, and Gerik Scheuermann. Lexcube: Interactive Visualization of Large Earth System Data Cubes. IEEE Computer Graphics and Applications, (44)1:25–37, Institute of Electrical and Electronics Engineers (IEEE), January 2024. [PUMA: zno] URL

Jan Sodoge, Christian Kuhlicke, Miguel D. Mahecha, and Mariana Madruga de Brito. Text mining uncovers the unique dynamics of socio-economic impacts of the 2018–2022 multi-year drought in Germany. Natural Hazards and Earth System Sciences, (24)5:1757–1777, Copernicus GmbH, May 2024. [PUMA: Zno] URL

Marco Hannemann, Almudena Garc\'ıa-Garc\'ıa, Rafael Poyatos, Miguel D Mahecha, and Jian Peng. Estimating transpiration globally by integrating the Priestley-Taylor model with neural networks. Environ. Res. Lett., (19)11:114089, IOP Publishing, November 2024. [PUMA: zno]

Oscar J. Pellicer-Valero, Miguel-Ángel Fernández-Torres, Chaonan Ji, Miguel D. Mahecha, and Gustau Camps-Valls. Explainable Earth Surface Forecasting under Extreme Events. arXiv, 2024. [PUMA: zno] URL

Teja Kattenborn, Sebastian Wieneke, David Montero, Miguel D. Mahecha, Ronny Richter, Claudia Guimarães-Steinicke, Christian Wirth, Olga Ferlian, Hannes Feilhauer, Lena Sachsenmaier, Nico Eisenhauer, and Benjamin Dechant. Temporal dynamics in vertical leaf angles can confound vegetation indices widely used in Earth observations. Communications Earth & Environment, (5)1Springer Science and Business Media LLC, October 2024. [PUMA: zno] URL

Shijie Jiang, Lily‐belle Sweet, Georgios Blougouras, Alexander Brenning, Wantong Li, Markus Reichstein, Joachim Denzler, Wei Shangguan, Guo Yu, Feini Huang, and Jakob Zscheischler. How Interpretable Machine Learning Can Benefit Process Understanding in the Geosciences. Earth’s Future, (12)7American Geophysical Union (AGU), July 2024. [PUMA: yaff] URL

Brian Groenke, Kristoffer Aalstad, Norbert Pirk, Sebastian Westermann, Jakob Zscheischler, Guillermo Gallego, and Julia Boike. Simulation-based inference as a paradigm for scientific machine learning in the cryosphere and beyond. Copernicus GmbH, March 2024. [PUMA: zno] URL

Ni Li, Wim Thiery, Jakob Zscheischler, Gabriele Messori, Liane Guillou, Joakim Nivre, Olof Görnerup, Seppe Lampe, Clare Flynn, Mariana Madruga de Brito, and Aglae Jezequel. A new climate impact database using generative AI. Copernicus GmbH, November 2024. [PUMA: zno] URL

Daniel Klotz, Martin Gauch, Frederik Kratzert, Grey Nearing, and Jakob Zscheischler. Technical Note: The divide and measure nonconformity – how metrics can mislead when we evaluate on different data partitions. Hydrology and Earth System Sciences, (28)15:3665–3673, Copernicus GmbH, August 2024. [PUMA: zno] URL

Mohit Anand, Friedrich J. Bohn, Gustau Camps-Valls, Rico Fischer, Andreas Huth, Lily-belle Sweet, and Jakob Zscheischler. Identifying compound weather drivers of forest biomass loss with generative deep learning. Environmental Data Science, (3)Cambridge University Press (CUP), 2024. [PUMA: zno] URL

Ni Li, Shorouq Zahra, Mariana Brito, Clare Flynn, Olof Görnerup, Koffi Worou, Murathan Kurfali, Chanjuan Meng, Wim Thiery, Jakob Zscheischler, Gabriele Messori, and Joakim Nivre. Using LLMs to Build a Database of Climate Extreme Impacts. Proceedings of the 1st Workshop on Natural Language Processing Meets Climate Change (ClimateNLP 2024), 93–110, Association for Computational Linguistics, 2024. [PUMA: imported zno] URL

Siavash Ghiasvand, and Florina M. Ciorba. Assessing Data Usefulness for Failure Analysis in Anonymized System Logs. Proceedings of the 17th International Symposium on Parallel and Distributed Computing (ISPDC), 164--171, Geneva, Switzerland, June 2018. [PUMA: zno]

Maximilian Joas, Neringa Jurenaite, Dusan Prascevic, Nico Scherf, and Jan Ewald. A generalized and versatile framework to train and evaluate autoencoders for biological representation learning and beyond: AUTOENCODIX. bioRxiv, Cold Spring Harbor Laboratory, December 2024. [PUMA: xack] URL

Cristian A. Velandia-Huerto, Ali M. Yazbeck, Jana Schor, and Peter F. Stadler. Evolution and Phylogeny of MicroRNAs — Protocols, Pitfalls, and Problems. miRNomics, 211–233, Springer US, February 2012. [PUMA: Evolution MicroRNAs Phylogeny Zno] URL

Chaonan Ji, Tonio Fincke, Vitus Benson, Gustau Camps-Valls, Miguel-Ángel Fernández-Torres, Fabian Gans, Guido Kraemer, Francesco Martinuzzi, David Montero, Karin Mora, Oscar J. Pellicer-Valero, Claire Robin, Maximilian Söchting, Mélanie Weynants, and Miguel D. Mahecha. DeepExtremeCubes: Earth system spatio-temporal data for assessing compound heatwave and drought impacts. Scientific Data, (12)1:149, Jan 25, 2025. [PUMA: Yaff topic_earthenvironment] URL

Evangelia Skoufa, Jixing Zhong, Oliver Kahre, Kelly Hu, Georgios Tsissios, Louise Carrau, Antonio Herrera, Albert Dominguez Mantes, Alejandro Castilla-Ibeas, Hwanseok Jang, Martin Weigert, Gioele La Manno, Matthias Lutolf, Marian Ros, and Can Aztekin. Specialized signaling centers direct cell fate and spatial organization in a limb organoid model. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: ML_Spatial_Understanding Zno] URL

Mauro Gwerder, Cansaran Saygili Demir, Hannah L Williams, Alessandro Lugli, Cristina Graham Martinez, Joanna Kowal, Amjad Khan, Philipp Kirchner, Thibaud Koessler, Martin D Berger, and others. Morpho-molecular features of Epithelial Mesenchymal Transition associate with clinical outcome in patients with rectal cancer. bioRxiv, 2024--11, Cold Spring Harbor Laboratory, 2024. [PUMA: ML_Spatial_Understanding Yaff]

Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, and others. CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. arXiv preprint arXiv:2303.06274, (92):103047, 2023. [PUMA: Computational_pathology Deep_learning ML_Spatial_Understanding Nuclear_recognition Zno] URL

Andreas Müller, Deborah Schmidt, Jan Philipp Albrecht, Lucas Rieckert, Maximilian Otto, Leticia Elizabeth Galicia Garcia, Gunar Fabig, Michele Solimena, and Martin Weigert. Modular segmentation, spatial analysis and visualization of volume electron microscopy datasets. Nature Protocols, 1--31, Nature Publishing Group UK London, 2024. [PUMA: ML_Spatial_Understanding Zno]

Benjamin Gallusser, and Martin Weigert. Trackastra: Transformer-based cell tracking for live-cell microscopy. European Conference on Computer Vision, 467--484, 2025. [PUMA: ML_Spatial_Understanding imported]

Rhea Sanjay Sukthanker, Arber Zela, Benedikt Staffler, Aaron Klein, Lennart Purucker, Joerg K. H. Franke, and Frank Hutter. HW-GPT-Bench: Hardware-Aware Architecture Benchmark for Language Models. The Thirty-eight Conference on Neural Information Processing Systems Datasets and Benchmarks Track (NeurIPS'24), 2024. [PUMA: AutoML Xack Yaff large_language_models neural_architecture_search]

Antonia Stubenvoll, Maria Schmidt, Johanna Moeller, Max Alexander Lingner Chango, Carolyn Schultz, Olga Antoniadou, Henry Loeffler-Wirth, Stephan Bernhart, Florian Peter Große, Beatrice Thier, Annette Paschen, Ulf Anderegg, Jan C. Simon, Mirjana Ziemer, Clara T. Schoeder, Hans Binder, and Manfred Kunz. Single-cell transcriptomics and epigenomics point to CD58-CD2 interaction in controlling primary melanoma growth and immunity. Cancer Communications, (n/a)n/aJohn Wiley & Sons, Ltd, January 2025. [PUMA: Yaff melanoma myown single-cell topic_lifescience transcriptomics] URL

Byung Ho Lee, Kana Fuji, Heike Petzold, Phil Seymour, Siham Yennek, Coline Schewin, Allison Lewis, Daniel Riveline, Tetsuya Hiraiwa, Masaki Sano, and Anne Grapin-Botton. Control of lumen geometry and topology by the interplay between pressure and cell proliferation rate in pancreatic organoids. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: Yaff imported] URL

Yuvaraj Natarajan, Gitanjali Wadhwa, Sri Preethaa K R, Karthic Sundaram, and Rama Abirami K. Advancing Sustainable IoT Appliance Load Monitoring Through Edge-Enabled Federated Transfer Learning. 2024 International Conference on Green Energy, Computing and Sustainable Technology (GECOST), 386-391, January 2024. [PUMA: Yaff imported]

Reza Nicknam, Seyyed Rouhollah Hadj Zargarbashi, and Abtin Safavipour. AI Development in Germany After the Publication of German Nation AI Strategy, Problems and Solutions. Journal of Humanities and Education Development, (6)5:68–81, AI Publications, 2024. [PUMA: Zno imported] URL

Prakash Gondode, Sakshi Duggal, and Vaishali Mahor. Artificial intelligence hallucinations in anaesthesia: Causes, consequences and countermeasures. Indian Journal of Anaesthesia, (68)7:658–661, Medknow, June 2024. [PUMA: Zno imported] URL

Patricia Evelyn Schlosser. Klangwelten neu gedacht : Zur Nutzung und Rolle von Künstlicher Intelligenz in der Musikproduktion. Universitäts- und Landesbibliothek Sachsen-Anhalt, 2024. [PUMA: Zno imported] URL

Gishnu Harikumar Parvathy, Dhananjay Bhandiwad, Lars Eggers, Linda von Borstel, Jochen Behrends, Martina Hein, David Hertz, Jaqueline Marschner, Zane Orinska, Stefan H E Kaufmann, Mario Alberto Flores-Valdez, Hanna Lotter, and Bianca E Schneider. Sex differences in vaccine induced immunity and protection againstMycobacterium tuberculosis. Cold Spring Harbor Laboratory, April 2024. [PUMA: Yaff imported] URL

Atharva Naik. On the Limitations of Embedding Based Methods for Measuring Functional Correctness for Code Generation. 2024. [PUMA: Zno imported] URL

Meysam Alishahi, and Jeff M. Phillips. No Dimensional Sampling Coresets for Classification. 2024. [PUMA: Yaff imported] URL

Aldo Acevedo, Yue Wu, Fabio Lorenzo Traversa, and Carlo Vittorio Cannistraci. Geometric separability of mesoscale patterns in embedding representation and visualization of multidimensional data and complex networks. PLOS Complex Systems, (1)2:1-28, Public Library of Science, October 2024. [PUMA: Yaff imported] URL

Jakob Rehof. LIPIcs, Volume 299, FSCD 2024, Complete Volume. Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2024. [PUMA: Xack Yaff imported] URL

C. Molinari, J. Bulgarelli, F. Rebuzzi, R. Camara, V. Kokala Dimitropoulou, E. Petracci, J. Ewald, D. Prascevic, P. Ulivi, M. Canale, M. Monti, S. Tamberi, and A. Derventzi. 16P The role of systemic immunity in locally advanced gastric cancer patients treated with neoadjuvant chemotherapy. ESMO Open, (9):103762, 2024. [PUMA: Yaff imported] URL

Patrick Ebel, Rochelle Schneider, Massimo Bonavita, Mariana Clare, Anna Jungbluth, Maryam Pourshamsi, Matthew Chantry, Mihai Alexe, Alessandro Sebastianelli, and Marcin Chrust. 2024 ESA-ECMWF workshop report: current status, progress and opportunities in machine learning for Earth system observation and prediction. npj Climate and Atmospheric Science, (7)1:241, Oct 9, 2024. [PUMA: Zno imported] URL

Maria Wyrzykowska, Gabriel della Maggiora, Nikita Deshpande, Ashkan Mokarian, and Artur Yakimovich. A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy. Cold Spring Harbor Laboratory, September 2024. [PUMA: Xack imported] URL

Vaibhav Sharma, and Artur Yakimovich. A deep learning dataset for sample preparation artefacts detection in multispectral high-content microscopy. Scientific Data, (11)1:232, Feb 23, 2024. [PUMA: Xack imported] URL

Mariana Madruga de Brito, Jan Sodoge, Zora Reckhaus, Miguel Mahecha, and Christian Kuhlicke. Analyzing impact cascades: an integrative approach for assessing the interconnected effects of extreme events across sectors and systems. EGU General Assembly Conference Abstracts, 1496, April 2024. [PUMA: Yaff imported]

Gabriela Araujo-Pardo, Marston Conder, Natalia García-Colín, György Kiss, and Dimitri Leemans. A note on girth-diameter cages. 2024. [PUMA: Yaff imported] URL

Nicolas-Domenic Reiter, Jonas Wahl, Gabriele C. Hegerl, and Jakob Runge. Asymptotic Uncertainty in the Estimation of Frequency Domain Causal Effects for Linear Processes. 2024. [PUMA: Yaff imported] URL

Michael Faerber, David Lamprecht, and Yuni Susanti. AutoRDF2GML: Facilitating RDF Integration in Graph Machine Learning. In Gianluca Demartini, Katja Hose, Maribel Acosta, Matteo Palmonari, Gong Cheng, Hala Skaf-Molli, Nicolas Ferranti, Daniel Hernández, and Aidan Hogan (Eds.), The Semantic Web -- ISWC 2024, 115--133, Springer Nature Switzerland, Cham, 2025. [PUMA: Yaff imported]

Jens Lehmann, Dhananjay Bhandiwad, Preetam Gattogi, and Sahar Vahdati. Beyond Boundaries: A Human-like Approach for Question Answering over Structured and Unstructured Information Sources. Transactions of the Association for Computational Linguistics, (12):786--802, MIT Press, Cambridge, MA, 2024. [PUMA: Yaff imported] URL

Greg Eisenhauer, Norbert Podhorszki, Ana Gainaru, Scott Klasky, Philip E. Davis, Manish Parashar, Matthew Wolf, Eric Suchtya, Erick Fredj, Vicente Bolea, Franz Pöschel, Klaus Steiniger, Michael Bussmann, Richard Pausch, and Sunita Chandrasekaran. Streaming Data in HPC Workflows Using ADIOS. 2024. [PUMA: Zno imported] URL

Jeremy J. Williams, Daniel Medeiros, Stefan Costea, David Tskhakaya, Franz Poeschel, René Widera, Axel Huebl, Scott Klasky, Norbert Podhorszki, Leon Kos, Ales Podolnik, Jakub Hromadka, Tapish Narwal, Klaus Steiniger, Michael Bussmann, Erwin Laure, and Stefano Markidis. Enabling High- Throughput Parallel I/O in Particle-in-Cell Monte Carlo Simulations with openPMD and Darshan I/O Monitoring. 2024 IEEE International Conference on Cluster Computing Workshops (CLUSTER Workshops), 86-95, September 2024. [PUMA: Zno imported]

Anshu Ankolekar, Sebastian Boie, Maryam Abdollahyan, Emanuela Gadaleta, Seyed Alireza Hasheminasab, Guang Yang, Charles Beauville, Nikolaos Dikaios, George Anthony Kastis, Michael Bussmann, Sara Khalid, Hagen Kruger, Philippe Lambin, and Giorgos Papanastasiou. Advancing oncology with federated learning: transcending boundaries in breast, lung, and prostate cancer. A systematic review. 2024. [PUMA: Zno imported] URL

Dieter Weber, Simeon Ehrig, Andreas Schropp, Alexander Clausen, Silvio Achilles, Nico Hoffmann, Michael Bussmann, Rafal E Dunin-Borkowski, and Christian G Schroer. Live Iterative Ptychography. Microscopy and Microanalysis, (30)1:103–117, Oxford University Press (OUP), February 2024. [PUMA: Iterative Live Ptychography Zno imported] URL

Beth Russell, Katharina Beyer, Ailbhe Lawlor, Monique J. Roobol, Lionne D.F. Venderbos, Sebastiaan Remmers, Erik Briers, Sara J. MacLennan, Steven MacLennan, Muhammad Imran Omar, Mieke Van Hemelrijck, Emma Smith, James N’Dow, Karin Plass, Maria Ribal, Nicolas Mottet, Robert Shepherd, Tom Abbott, Ken Mastris, Lisa Moris, Michael Lardas, Thomas Van den Broeck, Peter-Paul Willemse, Nicola Fossati, Karl Pang, Riccardo Campi, Isabella Greco, Mauro Gacci, Sergio Serni, Anders Bjartell, Ragnar Lonnerbro, Alberto Briganti, Daniele Crosti, Roberto Garzonio, Giorgio Gandaglia, Martina Faticoni, Grant office, Chris Bangma, Maria Jongerden, Derya Tilki, Anssi Auvinen, Teemu Murtola, Tapio Visakorpi, Kirsi Talala, Teuvo Tammela, Aino Siltari, Stephane Lejeune, Laurence Colette, Simona Caputova, Delielena Poli, Sophie Byrne, Luz Fialho, Ashley Rowland, Neo Tapela, Nicola Di Flora, Kathi Apostolidis, Valerie Lemair, Bertrand De Meulder, Charles Auffray, Nesrine Taibi, Ayman Hijazy, Albert Saporta, Kai Sun, Shaun Power, Nazanin Zounemat Kermani, Kees van Bochove, Azadeh Tafreshiha, Chiara Bernini, Denis Horgan, Louise Fullwood, Marc Holtorf, Doron Lancet, Gabi Bernstein, Sheela Tripathee, Manfred Wirth, Michael Froehner, Beate Brenner, Angelika Borkowetz, Christian Thomas, Friedemann Horn, Kristin Reiche, Markus Kreuz, Andreas Josefsson, Delila Gasi Tandefelt, Jonas Hugosson, Jack Schalken, Henkjan Huisman, Thomas Hofmarcher, Peter Lindgren, Emelie Andersson, Adam Fridhammar, Monica Tames Grijalva, Susan Evans-Axelsson, Frank Verholen, Jihong Zong, John-Edward Butler-Ransohoff, Todd Williamson, Reg Waldeck, Amanda Bruno, Ekaterina Nevedomskaya, Samuel Fatoba, Niculae Constantinovici, Carl Steinbeisser, Monika Maass, Patrizia Torremante, Emmanuelle Dochy, Federica Pisa, Marc Dietrich Voss, Kishore Papineni, Jing Wang silvanto, Robert Snijder, Xuewei Wang, Mark Lambrecht, Russ Wolfinger, Sherinne Eid, Soundarya Palanisamy, Samiul Haque, Laurent Antoni, Angela Servan, Katie Pascoe, Paul Robinson, Joana Lencart, Bertrand Jaton, Heidi Turunen, Olavi Kilkku, Pasi Pohjanjousi, Olli Voima, Liina Nevalaita, Keijo Punakivi, Sarah Seager, Shilpa Ratwani, Katarzyna Grzeslak, James Brash, Elaine Longden-Chapman, Danny Burke, Muriel Licour, Sarah Payne, Alan Yong, Flavia Lujan, Sophia Le Mare, Jan Hendrich, Michael Bussmann, Juckeland, Kotik, Delielena Poli, and Christian Reich. Survivorship Data in Prostate Cancer: Where Are We and Where Do We Need To Be?. European Urology Open Science, (59):27–29, Elsevier BV, January 2024. [PUMA: Cancer: Data Prostate Survivorship Zno imported] URL

Klaus Steiniger, Rene Widera, Sergei Bastrakov, Michael Bussmann, Sunita Chandrasekaran, Benjamin Hernandez, Kristina Holsapple, Axel Huebl, Guido Juckeland, Jeffrey Kelling, Matt Leinhauser, Richard Pausch, David Rogers, Ulrich Schramm, Jeff Young, and Alexander Debus. EZ: An efficient, charge conserving current deposition algorithm for electromagnetic particle-in-cell simulations. Computer Physics Communications, (291):108849, 2023. [PUMA: Charge Current EZ PIConGPU Particle-in-cell Zno conservation deposition imported] URL

Wael Elwasif, William Godoy, Nick Hagerty, J. Austin Harris, Oscar Hernandez, Balint Joo, Paul Kent, Damien Lebrun-Grandie, Elijah Maccarthy, Veronica Melesse Vergara, Bronson Messer, Ross Miller, Sarp Oral, Sergei Bastrakov, Michael Bussmann, Alexander Debus, Klaus Steiniger, Jan Stephan, Rene Widera, Spencer Bryngelson, Henry Le Berre, Anand Radhakrishnan, Jeffrey Young, Sunita Chandrasekaran, Florina Ciorba, Osman Simsek, Kate Clark, Filippo Spiga, Jeff Hammond, Stone John, David Hardy, Sebastian Keller, Jean-Guillaume Piccinali, and Christian Trott. Application Experiences on a GPU-Accelerated Arm-based HPC Testbed. Proceedings of the HPC Asia 2023 Workshops, 35–49, Association for Computing Machinery, New York, NY, USA, 2023. [PUMA: Zno imported] URL

Anna Willmann, Jurjen Couperus Cabadağ, Yen-Yu Chang, Richard Pausch, Amin Ghaith, Alexander Debus, Arie Irman, Michael Bussmann, Ulrich Schramm, and Nico Hoffmann. Learning Electron Bunch Distribution along a FEL Beamline by Normalising Flows. 2023. [PUMA: Bunch Distribution Electron Learning Zno imported] URL

Brian Edward Marré, Ulrich Schramm, Michael Bussmann, Thomas Kluge, Thomas Cowan, René Widera, Sergei Bastrakov, and Axel Huebl. Atomic population kinetics for Particle in Cell. 2023. [PUMA: Atomic Zno imported kinetics population]

Peer-Timo Bremer, Brian Spears, Tom Gibbs, and Michael Bussmann. AI-Augmented Facilities: Bridging Experiment and Simulation with ML (Dagstuhl Seminar 23132). Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2023. [PUMA: AI-Augmented Facilities Zno imported] URL

Bernhard Manfred Gruber, Guilherme Amadio, Jakob Blomer, Alexander Matthes, René Widera, and Michael Bussmann. LLAMA: The low‐level abstraction for memory access. Software: Practice and Experience, (53)1:115–141, Wiley, March 2022. [PUMA: LLAMA Zno access imported memory] URL

Patrick Stiller, Varun Makdani, Franz Pöschel, Richard Pausch, Alexander Debus, Michael Bussmann, and Nico Hoffmann. Continual learning autoencoder training for a particle-in-cell simulation via streaming. 2022. [PUMA: Continual Zno autoencoder imported learning particle-in-cell simulation training] URL

J. N’Dow, E.J. Smith, K. Polychronopoulos, A. Cannon, M. Roobol, S. Auweter, M. Thomas, A. Kremer, B. De Meulder, D. Dellamonica, D.P. Alhambra, A. Asiimwe, M. Bussmann, X. Ji, P. Torremante, S. Keller, F. Kube, and H. Krueger. 917P OPTIMA: Improve care for patients with prostate, breast, and lung cancer through artificial intelligence. Annals of Oncology, (33):S966, Elsevier BV, September 2022. [PUMA: 917P OPTIMA Zno imported] URL

Accelerator Programming Using Directives: 8th International Workshop, WACCPD 2021, Virtual Event, November 14, 2021, Proceedings. In Sridutt Bhalachandra, Christopher Daley, and Verónica Melesse Vergara (Eds.), Springer-Verlag, Berlin, Heidelberg, 2021. [PUMA: 2021 Accelerator Programming WACCPD Zno imported]

George Markomanolis, Aksel Alpay, Jeffrey Young, Michael Klemm, Nicholas Malaya, Aniello Esposito, Jussi Heikonen, Sergei Bastrakov, Alexander Debus, Thomas Kluge, Klaus Steiniger, Jan Stephan, Rene Widera, and Michael Bussmann. Evaluating GPU Programming Models for the LUMI Supercomputer. 79-101, January 2022. [PUMA: GPU LUMI Programming Supercomputer Zno]

W Elwasif, S Bastrakov, Spencer H Bryngelson, Michael Bussmann, Sunita Chandrasekaran, F Ciorba, Michael A Clark, Alexander Debus, W Godoy, Nick Hagerty, and others. Early application experiences on a modern GPU-accelerated Arm-based HPC platform. HPC Asia, (23)2022. [PUMA: Arm-based Early GPU-accelerated HPC Zno application experiences modern platform]

Martin Potthast, Paolo Rosso, Efstathios Stamatatos, and Benno Stein. A Decade of Shared Tasks in Digital Text Forensics at PAN. In Leif Azzopardi, Benno Stein, Norbert Fuhr, Philipp Mayr, Claudia Hauff, and Djoerd Hiemstra (Eds.), Advances in Information Retrieval. 41st European Conference on IR Research (ECIR 2019), (11438):291--300, Springer, Berlin Heidelberg New York, April 2019. [PUMA: Decade Digital Forensics PAN Shared Tasks Text Zno]

Johannes Kiesel, Fabienne Hubricht, Benno Stein, and Martin Potthast. A Dataset for Content Error Detection in Web Archives. In Maria Bonn, Stephen J. Downie, Alain Martaus, and Dan Wu (Eds.), 18th ACM/IEEE Joint Conference on Digital Libraries (JCDL 2019), 349--350, ACM, June 2019. [PUMA: Archives Content Dataset Detection Error Web Zno]

Martin Potthast, Lukas Gienapp, Florian Euchner, Nick Heilenkötter, Nico Weidmann, Henning Wachsmuth, Benno Stein, and Matthias Hagen. Argument Search: Assessing Argument Relevance. 42nd International ACM Conference on Research and Development in Information Retrieval (SIGIR 2019), ACM, July 2019. [PUMA: Argument Assessing Relevance Search Zno]

Eva Zangerle, Michael Tschuggnall, Günther Specht, Benno Stein, and Martin Potthast. Overview of the Style Change Detection Task at PAN 2019. In Linda Cappellato, Nicola Ferro, David E. Losada, and Henning Müller (Eds.), Working Notes Papers of the CLEF 2019 Evaluation Labs, (2380)September 2019. [PUMA: 2019 Change Detection Overview PAN Style Task Zno] URL

Sebastian Bischoff, Niklas Deckers, Marcel Schliebs, Ben Thies, Matthias Hagen, Efstathios Stamatatos, Benno Stein, and Martin Potthast. The Importance of Suppressing Domain Style in Authorship Analysis. CoRR, (abs/2005.14714)May 2020. [PUMA: Analysis Authorship Domain Importance Style Suppressing Zno] URL

Johannes Kiesel, Florian Kneist, Lars Meyer, Kristof Komlossy, Benno Stein, and Martin Potthast. Web Page Segmentation Revisited: Evaluation Framework and Dataset. In Mathieu d'Aquin, Stefan Dietze, Claudia Hauff, Edward Curry, and Philippe Cudré-Mauroux (Eds.), 29th ACM International Conference on Information and Knowledge Management (CIKM 2020), 3047--3054, ACM, October 2020. [PUMA: Dataset Evaluation Framework Page Revisited Segmentation Web Zno]

Michael Völske, Janek Bevendorff, Johannes Kiesel, Benno Stein, Maik Fröbe, Matthias Hagen, and Martin Potthast. Web Archive Analytics: Infrastructure & Applications @ Webis (extended abstract). In Andreas Wagner, Christian Guetl, Michael Granitzer, and Stefan Voigt (Eds.), 2nd International Symposium on Open Search Technology (OSSYM 2020), International Open Search Symposium, October 2020. [PUMA: Analytics Applications Archive Infrastructure Web Webis Zno]

Shahbaz Syed, Wei-Fan Chen, Matthias Hagen, Benno Stein, Henning Wachsmuth, and Martin Potthast. Task Proposal: Abstractive Snippet Generation for Web Pages. 13th International Conference on Natural Language Generation (INLG 2020), 237--241, Association for Computational Linguistics, December 2020. [PUMA: Abstractive Generation Pages Proposal Snippet Task Web Zno] URL

43rd International Conference on IR Research (ECIR 2021). In Djoerd Hiemstra, Marie-Francine Moens, Josiane Mothe, Raffaele Perego, Martin Potthast, and Fabrizio Sebastiani (Eds.), Lecture Notes in Computer Science, (12656)Springer, Berlin Heidelberg New York, April 2021. [PUMA: 2021 43rd Conference ECIR IR International Research Zno]

Arno Simons, Wolfgang Kircheis, Marion Schmidt, Martin Potthast, and Benno Stein. When a social network writes science history: How Wikipedia frames innovation processes. Framing Innovation in a Networked World. An Interdisciplinary Workshop, September 2021. [PUMA: Wikipedia Zno history innovation network processes science social] URL

Shahbaz Syed, Tariq Yousef, Khalid Al-Khatib, Stefan Jänicke, and Martin Potthast. SUMMARY EXPLORER: Visualizing the State of the Art in Text Summarization. In Marie-Francine Moens, Xuanjing Huang, Lucia Specia, and Scott Wen-tau Yih (Eds.), 26th Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 185--194, Association for Computational Linguistics, November 2021. [PUMA: EXPLORER SUMMARY Summarization Text Visualizing Xack]

Milad Alshomary, Timon Gurcke, Shahbaz Syed, Philipp Heinisch, Maximilian Spliethöver, Philipp Cimiano, Martin Potthast, and Henning Wachsmuth. Key Point Analysis via Contrastive Learning and Extractive Argument Summarization. In Khalid Al-Khatib, Yufang Hou, and Manfred Stede (Eds.), 8th Workshop on Argument Mining (ArgMining 2021) at EMNLP, 184--189, Association for Computational Linguistics, November 2021. [PUMA: Analysis Argument Contrastive Extractive Key Learning Point Summarization Zno]

Parvaneh Joharinad, and Jürgen Jost. Weighted complexes, cohomology and Laplace operators. Mathematical Principles of Topological and Geometric Data Analysis, 2:65--81, Springer International Publishing, Cham, 2023. [PUMA: Laplace Weighted Xack Yaff cohomology complexes operators]

Hermann Diebel-Fischer. Vom Wurstessen zur Revolution?. Pastoraltheologie, (112)1:44--56, Brill Deutschland GmbH, January 2023. [PUMA: Menschen Selbstbefreiung Yaff]

Christina Gillmann, Johanna Schmidt, and Daniel Wiegreffe. Visualization in the Wild. IEEE Comput. Graph. Appl., (43)6:46--49, Institute of Electrical and Electronics Engineers (IEEE), November 2023. [PUMA: Visualization Xack]

Karsten Rink, Nico Graebling, Lars Bilke, Jörg Buchwald, Thomas Fischer, Christoph Lehmann, Tobias Meisel, Dmitri Naumov, Wenqing Wang, Keita Yoshioka, and Olaf Kolditz. Virtual reality and computational efficiency. SpringerBriefs in Earth System Sciences, 77--89, Springer Nature Switzerland, Cham, 2023. [PUMA: Virtual Yaff computational efficiency reality]

Sahar Vahdati, Deepankan Bharathi Nagaraj, Maximilian Bryan, Sobhan Moazemi, Sabine Gründer-Fahrer, and Michael Martin. Utilizing transformers on OCT imagery and metadata for treatment response prediction in macular edema patients. Lecture Notes in Computer Science, 3--15, Springer Nature Switzerland, Cham, 2023. [PUMA: OCT Xack edema macular prediction response topic_lifescience transformers treatment]

Saeed Karami, Farid Saberi-Movahed, Prayag Tiwari, Pekka Marttinen, and Sahar Vahdati. Unsupervised feature selection based on variance–covariance subspace distance. Neural Networks, (166):188-203, 2023. [PUMA: Feature Regularization Subspace Xack distance learning selection] URL

Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, and Elizabeth A Archie. Universal gut microbial relationships in the gut microbiome of wild baboons. Elife, (12)eLife Sciences Publications, Ltd, May 2023. [PUMA: Zno bacteria between community correlations cynocephalus data disease dynamics ecology gut infectious longitudinal microbiology microbiome microbiota personalization universality] URL

Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern Menze, Karel G M Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gaël Varoquaux, Ziv R Yaniv, Paul F Jäger, and Lena Maier-Hein. Understanding metric-related pitfalls in image analysis validation. Nat. Methods, (21)2:182--194, Springer Science and Business Media LLC, February 2024. [PUMA: Zno analysis image pitfalls validation]

Deborah Oliveros, Érika Roldán, Pablo Soberón, and Antonio J Torres. Tverberg Partition Graphs. 2023. [PUMA: Graphs Partition Tverberg Yaff]

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Treating role assertions as first-class citizens in repair and error-tolerant reasoning. Proceedings of the 38th ACM/SIGAPP Symposium on Applied Computing, 974--982, ACM, New York, NY, USA, March 2023. [PUMA: Xack assertions citizens error-tolerant first-class reasoning repair role]

Sandeep Kumar, Hossein Tahmasbi, Kushal Ramakrishna, Mani Lokamani, Svetoslav Nikolov, Julien Tranchida, Mitchell A Wood, and Attila Cangi. Transferable interatomic potential for aluminum from ambient conditions to warm dense matter. Phys. Rev. Res., (5)3American Physical Society (APS), September 2023. [PUMA: Transferable Xack aluminum ambient conditions interatomic potential]

Jens Christian Refsgaard, Juliane Mai, Markus Hrachowitz, Sharad K Jain, and Simon Stisen. Towards more credible models in catchment hydrology to enhance hydrological process understanding: Preface. Authorea, Inc., September 2023. [PUMA: Yaff catchment credible hydrological hydrology models process]

Parvaneh Joharinad, and Jürgen Jost. Topological foundations, hypercomplexes and homology. Mathematics of Data, 15--64, Springer International Publishing, Cham, 2023. [PUMA: Topological foundations homology hypercomplexes]

Peter Christen, and Rainer Schnell. Thirty-three myths and misconceptions about population data: from data capture and processing to linkage. Int. J. Popul. Data Sci., (8)1:2115, Swansea University, January 2023. [PUMA: Xack administrative data editing errors linkage personal quality record]

Parvaneh Joharinad, and Jürgen Jost. The Laplace operator and the geometry of graphs. Mathematics of Data, 83--113, Springer International Publishing, Cham, 2023. [PUMA: Laplace geometry graphs operator]

Melissa Sanabria, Jonas Hirsch, and Anna R Poetsch. The human genome's vocabulary as proposed by the DNA language model GROVER. bioRxiv, July 2023. [PUMA: DNA GROVER Xack language model]

Manuel Estévez, Erika Roldan, and Henry Segerman. Surfaces in The Tesseract. 2023. [PUMA: Surfaces Tesseract Yaff]