Publications

Gotthard Meinel, Sujit Kumar Sikder, und Tobias Krueger. IOER Monitor: A Spatio-Temporal Research Data Infrastructure on Settlement and Open Space Development in Germany. Jahrbücher für Nationalökonomie und Statistik, (242)1:159--170, 2022. [PUMA: imported zno] URL

Franz Baader, Patrick Koopmann, Friedrich Michel, Anni-Yasmin Turhan, und Benjamin Zarriess. Efficient TBox Reasoning with Value Restrictions Using the ℱℒower Reasoner. In O. Arieli, M. Homola, J.C. Jung, und M.-L. Mugnier (Hrsg.), DL 2022 - Proceedings of the 35th International Workshop on Description Logics, co-located with Federated Logic Conference, FLoC 2022, (3263)CEUR-WS, 2022. [PUMA: imported zno]

Wolfgang Lehner, Kai-Uwe Sattler, und Johann-Christoph Freytag. BTW2021 erstmals als digitale Vortragsreihe. Datenbank-Spektrum, (22)1:67--71, 01.03.2022. [PUMA: imported zno] URL

Anahy Santiago Arguello, und Peter F Stadler. Whitney's connectivity inequalities for directed hypergraphs. The Art of Discrete and Applied Mathematics, (5)1:P1--01, 2022. [PUMA: imported zno]

Peter Schuster, und Peter F Stadler. Virus evolution on fitness landscapes. Viral Fitness and Evolution: Population Dynamics and Adaptive Mechanisms, 1--94, Springer, 2023. [PUMA: imported zno]

Ameera Vaheeda Shanavas, Manoj Changat, Marc Hellmuth, und Peter F Stadler. Unique least common ancestors and clusters in directed acyclic graphs. Conference on Algorithms and Discrete Applied Mathematics, 148--161, 2024. [PUMA: Zno imported]

Christiane Gärtner, Jörg Fallmann, Peter F Stadler, Thorsten Kaiser, und Sarah J Berkemer. Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis. Journal of Personalized Medicine, (13)6:924, MDPI, 2023. [PUMA: Zno imported]

Marc Hellmuth, und Peter F Stadler. The theory of gene family histories. Comparative Genomics: Methods and Protocols, 1--32, Springer, 2024. [PUMA: Zno imported]

Andrés M Bran, Peter F Stadler, Jürgen Jost, und Guillermo Restrepo. The six stages of the convergence of the periodic system to its final structure. Communications Chemistry, (6)1:87, Nature Publishing Group UK London, 2023. [PUMA: Zno imported]

Wilmer Leal, Eugenio J Llanos, Andrés Bernal, Peter F Stadler, Jürgen Jost, und Guillermo Restrepo. The expansion of chemical space in 1826 and in the 1840s prompted the convergence to the periodic system. Proceedings of the National Academy of Sciences, (119)30:e2119083119, National Acad Sciences, 2022. [PUMA: Zno imported]

Anne Hoffmann, Christian Lorenz, Jörg Fallmann, Philippe Wolff, Antony Lechner, Heike Betat, Mario Mörl, und Peter F Stadler. Temperature-Dependent tRNA Modifications in Bacillales. International Journal of Molecular Sciences, (25)16:8823, MDPI, 2024. [PUMA: Zno imported]

Annika Freudiger, Vladimir M Jovanovic, Yilei Huang, Noah Snyder-Mackler, Donald F Conrad, Brian Miller, Michael J Montague, Hendrikje Westphal, Peter F Stadler, Stefanie Bley, und others. Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. bioRxiv, Cold Spring Harbor Laboratory Preprints, 2024. [PUMA: Zno imported]

Anna Ender, Nadine Grafl, Tim Kolberg, Sven Findeiß, Peter F Stadler, und Mario Mörl. Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes. RNA, (28)4:551--567, Cold Spring Harbor Lab, 2022. [PUMA: Zno imported]

Fatma Chafra, Felipe Borim Correa, Faith Oni, Özlen Konu Karakayalı, Peter F Stadler, und Ulisses Nunes da Rocha. StandEnA: a customizable workflow for standardized annotation and generating a presence--absence matrix of proteins. Bioinformatics Advances, (3)1:vbad069, Oxford University Press, 2023. [PUMA: Zno imported]

Bruno J Schmidt, Tom Hartmann, und Peter F Stadler. Sorting signed permutations by tandem duplication random loss and inverse tandem duplication random loss. Advances in Applied Mathematics, (161):102757, Elsevier, 2024. [PUMA: Zno imported]

Richard A Schäfer, Dominik Rabsch, Guillaume E Scholz, Peter F Stadler, Wolfgang R Hess, Rolf Backofen, Jörg Fallmann, und Björn Voß. RNA interaction format: a general data format for RNA interactions. Bioinformatics, (39)11:btad665, Oxford University Press, 2023. [PUMA: Zno imported]

Anna Ender, Peter F Stadler, Mario Mörl, und Sven Findeiß. RNA design principles for riboswitches that regulate RNase P-mediated tRNA processing. Riboregulator Design and Analysis, 179--202, Springer, 2022. [PUMA: Zno imported]

José Antonio Ram\'ırez-Rafael, Annachiara Korchmaros, Katia Aviña-Padilla, Alitzel López Sánchez, Andrea Arlette España-Tinajero, Marc Hellmuth, Peter F Stadler, und Maribel Hernández-Rosales. REvolutionH-tl: Reconstruction of Evolutionary Histories tool. RECOMB International Workshop on Comparative Genomics, 89--109, 2024. [PUMA: Zno imported]

Tieu-Long Phan, Klaus Weinbauer, Thomas Gärtner, Daniel Merkle, Jakob L Andersen, Rolf Fagerberg, und Peter F Stadler. Reaction rebalancing: a novel approach to curating reaction databases. Journal of Cheminformatics, (16)1:82, Springer, 2024. [PUMA: Zno imported]

Paul Klemm, Peter F Stadler, und Marcus Lechner. Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-) orthologs. Frontiers in Bioinformatics, (3):1322477, Frontiers Media SA, 2023. [PUMA: Zno imported]