Publications

Najia Ahmadi, Michele Zoch, Oya Guengoeze, Carlo Facchinello, Antonia Mondorf, Katharina Stratmann, Khader Musleh, Hans-Peter Erasmus, Jana Tchertov, Richard Gebler, Jannik Schaaf, Lena S Frischen, Azadeh Nasirian, Jiabin Dai, Elisa Henke, Douglas Tremblay, Andrew Srisuwananukorn, Martin Bornhäuser, Christoph Röllig, Jan-Niklas Eckardt, Jan Moritz Middeke, Markus Wolfien, und Martin Sedlmayr. How to customize common data models for rare diseases: an OMOP-based implementation and lessons learned. Orphanet journal of rare diseases, (19)1BioMed Central, London, 14.08.2024. [PUMA: topic_lifescience Diseases FIS_scads Humans, Rare]

Najia Ahmadi, Michele Zoch, Patricia Kelbert, Richard Noll, Jannik Schaaf, Markus Wolfien, und Martin Sedlmayr. Methods Used in the Development of Common Data Models for Health Data: Scoping Review. JMIR medical informatics, (11)JMIR Publications Inc., 03.08.2023. [PUMA: topic_lifescience FIS_scads imported]

Waldemar Hahn, Najia Ahmadi, Katja Hoffmann, Jan-Niklas Eckardt, Martin Sedlmayr, und Markus Wolfien. Synthetic Data Generation in Hematology - Paving the Way for OMOP and FHIR Integration. Studies in health technology and informatics, (316):1472--1476, IOS Press, Amsterdam u. a., 22.08.2024. [PUMA: topic_lifescience Acute, Assessment, Care Electronic FIS_scads Health Hematology, Humans, Information Interoperability, Leukemia, Myeloid, Outcome Records,]

Chaithra Umesh, Manjunath Mahendra, Saptarshi Bej, Olaf Wolkenhauer, und Markus Wolfien. Challenges and applications in generative AI for clinical tabular data in physiology. Pflügers Archiv : European journal of physiology, Springer, Berlin u. a., 17.10.2024. [PUMA: topic_lifescience FIS_scads imported]

Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, und Michael Schroeder. Netrank: network-based approach for biomarker discovery. BMC bioinformatics, (24)1BioMed Central, London, 29.07.2023. [PUMA: topic_lifescience Algorithms, Area Biomedical Curve, Disease FIS_scads Gene Humans, Library Progression, Research, Under]

Negin Malekian, Srividhya Sainath, Ali Al-Fatlawi, und Michael Schroeder. Word-based GWAS harnesses the rich potential of genomic data for E. coli quinolone resistance. Frontiers in microbiology, (14):1276332, Frontiers Media S.A., 2023. [PUMA: topic_lifescience FIS_scads imported]

Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, und Nicole Poulsen. Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. New Phytologist, (240)2:770--783, Wiley-Blackwell, Oxford u. a., 07.08.2023. [PUMA: topic_lifescience Adhesives/metabolism, Bacteria Biofilms, Diatoms/metabolism, FIS_scads Gene Horizontal, Transfer,]

Ali Al-Fatlawi, Martin Menzel, und Michael Schroeder. Is Protein BLAST a thing of the past?. Nature communications, (14)1Nature Publishing Group, 11.12.2023. [PUMA: topic_lifescience Databases, FIS_scads Protein, Proteins/genetics]

Ali Al-Fatlawi, Michael Schroeder, und A Francis Stewart. The Rad52 SSAP superfamily and new insight into homologous recombination. Communications biology, (6)1Springer Nature, 23.01.2023. [PUMA: topic_lifescience DNA FIS_scads Homologous Protein/genetics Rad52 Recombination Recombination, Repair and]

Abhinav Singh, Quentin Vagne, Frank Jülicher, und Ivo F. Sbalzarini. Spontaneous flow instabilities of active polar fluids in three dimensions. Physical Review Research, (5)2American Physical Society, College Park, April 2023. [PUMA: topic_lifescience FIS_scads imported]

Suryanarayana Maddu, Dominik Sturm, Christian L. Mueller, und Ivo F. Sbalzarini. Inverse Dirichlet weighting enables reliable training of physics informed neural networks. Machine learning: science and technology, (3)1IOP Publishing Ltd., 15.02.2022. [PUMA: topic_lifescience ALGORITHM FIS_scads active catastrophic flow forgetting, gradient modeling, multi-objective multi-scale networks, neural physics-informed regularization, training, turbulence,]

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, und Ivo F. Sbalzarini. STENCIL-NET for equation-free forecasting from data. Scientific reports, (13)1Nature Publishing Group, Dezember 2023. [PUMA: topic_lifescience FIS_scads imported]

Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, und Ivo F. Sbalzarini. A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence. Physics of fluids, (35)10American Institute of Physics, 01.10.2023. [PUMA: topic_lifescience FIS_scads imported]

Johannes Pahlke, und Ivo F. Sbalzarini. A Unifying Mathematical Definition of Particle Methods. IEEE open journal of the computer society : an open access publication of the IEEE Computer Society, (4):97--108, Institute of Electrical and Electronics Engineers Inc., 2023. [PUMA: topic_lifescience Algorithmics, FIS_scads algorithms, definition, engineering formal mesh-free methods, parallelization, particle simulation software]

Suryanarayana Maddu, Quentin Vagne, und Ivo F. Sbalzarini. Learning deterministic hydrodynamic equations from stochastic active particle dynamics. 21.01.2022. [PUMA: topic_lifescience FIS_scads cond-mat.soft, cs.LG, physics.data-an]

Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, und Ivo F. Sbalzarini. Parallel Discrete Convolutions on Adaptive Particle Representations of Images. IEEE Transactions on Image Processing, (31):4197--4212, Wiley-IEEE Press, 01.01.2022. [PUMA: topic_lifescience Convolution, Data FIS_scads Image Microscopy, Signal processing, reconstruction, resolution resolution, structures,]

Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, und Ivo F. Sbalzarini. A C++ Library for Memory Layout and Performance Portability of Scientific Applications. In Jeremy Singer, Yehia Elkhatib, Dora Blanco Heras, Patrick Diehl, Nick Brown, und Aleksandar Ilic (Hrsg.), Euro-Par 2022, 109--120, Springer Science and Business Media B.V., Germany, 2023. [PUMA: topic_lifescience C++ FIS_scads GPU, algorithms, generic layout, memory multi-core, performance portability tuples,]

Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, und Philippe Poncet. Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems. Journal of computational physics, (491)Academic Press Inc., 15.10.2023. [PUMA: topic_lifescience Adaptive Artificial Bayesian Carlo, FIS_scads Hamiltonian Intelligence, Monte Multi-objective Quantification Uncertainty learning, networks, neural physics-informed training, weight]

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F Sbalzarini, und Christian L. Müller. Stability selection enables robust learning of differential equations from limited noisy data. Proceedings of the Royal Society of London : Series A, Mathematical, physical and engineering sciences, (478)2262Royal Society Publishing, Juni 2022. [PUMA: topic_lifescience FIS_scads PAR differential equations, learning learning, machine proteins, regression, selection, sparse stability statistical theory]

Chiara Molinari, Leonardo Solaini, Francesca Rebuzzi, Gianluca Tedaldi, Davide Angeli, Elisabetta Petracci, Dusan Prascevic, Jan Ewald, Erhard Rahm, Matteo Canale, und others. Genomic events stratifying prognosis of early gastric cancer. Gastric Cancer, 1--12, Springer, 2024. [PUMA: topic_lifescience area_bigdata ep imported]