Publications

Robert Haase. Towards Transparency and Knowledge Exchange in AI- assisted Data Analysis Code Generation. Zenodo, October 2024. [PUMA: unit_transfer topic_language topic_lifescience] URL

Najia Ahmadi, Quang Vu Nguyen, Martin Sedlmayr, and Markus Wolfien. A comparative patient-level prediction study in OMOP CDM: applicative potential and insights from synthetic data. Scientific reports, (14)1Nature Publishing Group, Jan 27, 2024. [PUMA: Databases, Electronic FIS_scads Factual, Health Humans, Informatics, Learning, Machine Medical Records topic_lifescience]

Suse Seidemann, Florian Salomon, Karl B Hoffmann, Thomas Kurth, Ivo F Sbalzarini, Robert Haase, and Marius Ader. Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales. FRONTIERS IN MOLECULAR NEUROSCIENCE, (17 (2024))Frontiers Media S.A., May 24, 2024. [PUMA: unit_transfer topic_lifescience FIS_scads imported]

Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, and Ivo F. Sbalzarini. Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data. Jun 17, 2022. [PUMA: topic_visualcomputing topic_lifescience FIS_scads Human-centered Visualization Visualization, and computing, concepts paradigms, techniques theory,]

Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, and Ivo F. Sbalzarini. Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. Jun 29, 2022. [PUMA: topic_visualcomputing topic_lifescience FIS_scads Human-centered Visualization Visualization, and computing, concepts paradigms techniques theory,]

Katja Hoffmann, Igor Nesterow, Yuan Peng, Elisa Henke, Daniela Barnett, Cigdem Klengel, Mirko Gruhl, Martin Bartos, Frank Nüßler, Richard Gebler, Sophia Grummt, Anne Seim, Franziska Bathelt, Ines Reinecke, Markus Wolfien, Jens Weidner, and Martin Sedlmayr. Streamlining intersectoral provision of real-world health data: a service platform for improved clinical research and patient care. Frontiers in medicine, (11):1377209, Frontiers Media S.A., 2024. [PUMA: topic_lifescience FIS_scads imported]

Katja Hoffmann, Yuan Peng, Tobias Schlosser, Gabriel Stolze, Holger Langner, Marcel Susky, Trixy Meyer, Marc Ritter, Danny Kowerko, Vinodh Kakkassery, Markus Wolfien, and Martin Sedlmayr. Towards Standardizing Ophthalmic Data for Seamless Interoperability in Eye Care. Studies in health technology and informatics, (317):139--145, IOS Press, Amsterdam u. a., Aug 30, 2024. [PUMA: topic_lifescience Diseases/therapy, Electronic Eye FIS_scads Germany, Health Humans, Information Interoperability/standards, Learning, Level Machine Ophthalmology Records/standards, Seven/standards,]

Kristian Schultz, Saptarshi Bej, Waldemar Hahn, Markus Wolfien, Prashant Srivastava, and Olaf Wolkenhauer. ConvGeN: A convex space learning approach for deep-generative oversampling and imbalanced classification of small tabular datasets. Pattern recognition : the journal of the Pattern Recognition Society, (147)Elsevier Science B.V., March 2024. [PUMA: topic_lifescience Convex FIS_scads GAN, Imbalanced LoRAS, Tabular data data, learning, space]

Daniel Bühler, Nicole Power Guerra, Luisa Müller, Olaf Wolkenhauer, Martin Düffer, Brigitte Vollmar, Angela Kuhla, and Markus Wolfien. Leptin deficiency-caused behavioral change - A comparative analysis using EthoVision and DeepLabCut. Frontiers in neuroscience, (17)Frontiers Media S.A., Mar 24, 2023. [PUMA: topic_lifescience Behavioral Deep DeepLabCut, EthoVision, FIS_scads Obesity analysis, learning,]

Praveen Vasudevan, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Anne-Marie Galow, Dirk Koczan, Tobias Lindner, Wendy Bergmann, Brigitte Mueller-Hilke, Brigitte Vollmar, Bernd Joachim Krause, Olaf Wolkenhauer, Gustav Steinhoff, and Robert David. CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation. Genome medicine, (15)1BioMed Central, London, Aug 10, 2023. [PUMA: topic_lifescience Animals, C57BL, Cardiac/metabolism, Cell FIS_scads Immunocompromised, Inbred Infarction, Machine Macrophages, Macrophages/metabolism, Mice, Monocytes/metabolism Myocardial Myocytes, Single-cell, infarction, learning, therapy,]

Jan-Niklas Eckardt, Waldemar Hahn, Christoph Röllig, Sebastian Stasik, Uwe Platzbecker, Carsten Müller-Tidow, Hubert Serve, Claudia D Baldus, Christoph Schliemann, Kerstin Schäfer-Eckart, Maher Hanoun, Martin Kaufmann, Andreas Burchert, Christian Thiede, Johannes Schetelig, Martin Sedlmayr, Martin Bornhäuser, Markus Wolfien, and Jan Moritz Middeke. Mimicking clinical trials with synthetic acute myeloid leukemia patients using generative artificial intelligence. npj digital medicine, (7)1Macmillan Publishers Limited, Mar 20, 2024. [PUMA: topic_lifescience FIS_scads imported]

Markus Wolfien, Najia Ahmadi, Kai Fitzer, Sophia Grummt, Kilian-Ludwig Heine, Ian-C Jung, Dagmar Krefting, Andreas Kühn, Yuan Peng, Ines Reinecke, Julia Scheel, Tobias Schmidt, Paul Schmücker, Christina Schüttler, Dagmar Waltemath, Michele Zoch, and Martin Sedlmayr. Ten Topics to Get Started in Medical Informatics Research. Journal of Medical Internet Research, (25)JMIR Publications Inc., Jul 24, 2023. [PUMA: topic_lifescience Algorithms, Clinical Curriculum, Digital FIS_scads Germany, Health Humans, Informatics, Interdisciplinary Medical Research clinical communication, data, digital health health, informatics informatics, interdisciplinary medical research]

Amankeldi A Salybekov, Markus Wolfien, Waldemar Hahn, Sumi Hidaka, and Shuzo Kobayashi. Artificial Intelligence Reporting Guidelines' Adherence in Nephrology for Improved Research and Clinical Outcomes. Biomedicines, (12)3MDPI, Basel, Mar 7, 2024. [PUMA: topic_lifescience FIS_scads imported]

Najia Ahmadi, Michele Zoch, Oya Guengoeze, Carlo Facchinello, Antonia Mondorf, Katharina Stratmann, Khader Musleh, Hans-Peter Erasmus, Jana Tchertov, Richard Gebler, Jannik Schaaf, Lena S Frischen, Azadeh Nasirian, Jiabin Dai, Elisa Henke, Douglas Tremblay, Andrew Srisuwananukorn, Martin Bornhäuser, Christoph Röllig, Jan-Niklas Eckardt, Jan Moritz Middeke, Markus Wolfien, and Martin Sedlmayr. How to customize common data models for rare diseases: an OMOP-based implementation and lessons learned. Orphanet journal of rare diseases, (19)1BioMed Central, London, Aug 14, 2024. [PUMA: topic_lifescience Diseases FIS_scads Humans, Rare]

Najia Ahmadi, Michele Zoch, Patricia Kelbert, Richard Noll, Jannik Schaaf, Markus Wolfien, and Martin Sedlmayr. Methods Used in the Development of Common Data Models for Health Data: Scoping Review. JMIR medical informatics, (11)JMIR Publications Inc., Aug 3, 2023. [PUMA: topic_lifescience FIS_scads imported]

Waldemar Hahn, Najia Ahmadi, Katja Hoffmann, Jan-Niklas Eckardt, Martin Sedlmayr, and Markus Wolfien. Synthetic Data Generation in Hematology - Paving the Way for OMOP and FHIR Integration. Studies in health technology and informatics, (316):1472--1476, IOS Press, Amsterdam u. a., Aug 22, 2024. [PUMA: topic_lifescience Acute, Assessment, Care Electronic FIS_scads Health Hematology, Humans, Information Interoperability, Leukemia, Myeloid, Outcome Records,]

Chaithra Umesh, Manjunath Mahendra, Saptarshi Bej, Olaf Wolkenhauer, and Markus Wolfien. Challenges and applications in generative AI for clinical tabular data in physiology. Pflügers Archiv : European journal of physiology, Springer, Berlin u. a., Oct 17, 2024. [PUMA: topic_lifescience FIS_scads imported]

Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, and Michael Schroeder. Netrank: network-based approach for biomarker discovery. BMC bioinformatics, (24)1BioMed Central, London, Jul 29, 2023. [PUMA: topic_lifescience Algorithms, Area Biomedical Curve, Disease FIS_scads Gene Humans, Library Progression, Research, Under]

Negin Malekian, Srividhya Sainath, Ali Al-Fatlawi, and Michael Schroeder. Word-based GWAS harnesses the rich potential of genomic data for E. coli quinolone resistance. Frontiers in microbiology, (14):1276332, Frontiers Media S.A., 2023. [PUMA: topic_lifescience FIS_scads imported]

Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, and Nicole Poulsen. Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. New Phytologist, (240)2:770--783, Wiley-Blackwell, Oxford u. a., Aug 7, 2023. [PUMA: topic_lifescience Adhesives/metabolism, Bacteria Biofilms, Diatoms/metabolism, FIS_scads Gene Horizontal, Transfer,]