Publications

Diego Esteves, Anisa Rula, Aniketh Janardhan Reddy, and Jens Lehmann. Toward Veracity Assessment in RDF Knowledge Bases: An Exploratory Analysis. J. Data and Information Quality, (9)3Association for Computing Machinery, New York, NY, USA, February 2018. [PUMA: DeFacto, analysis benchmark, checking, data data, exploratory fact linked quality, trustworthiness,] URL

Daniel Wiegreffe, Lydia Müller, Jens Steuck, Dirk Zeckzer, and Peter F Stadler. The Sierra Platinum Service for generating peak-calls for replicated ChIP-seq experiments. BMC Res. Notes, (11)1:512, July 2018. [PUMA: ChIP-seq; Histone Peak-caller; Replicate analysis modifications;]

Carl Beuchel, Susen Becker, Julia Dittrich, Holger Kirsten, Anke Toenjes, Michael Stumvoll, Markus Loeffler, Holger Thiele, Frank Beutner, Joachim Thiery, Uta Ceglarek, and Markus Scholz. Clinical and lifestyle related factors influencing whole blood metabolite levels - A comparative analysis of three large cohorts. Mol. Metab., (29):76--85, Elsevier BV, November 2019. [PUMA: Acylcarnitines; Amino Clinical Lifestyle Metabolomics; Network acids; analysis factors;]

Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, and Christian L. Müller. Stability selection enables robust learning of partial differential equations from limited noisy data. arXiv, 2019. [PUMA: (cs.LG), (math.NA), (physics.data-an), Analysis Analysis, Computer Data FOS: Learning Machine Mathematics, Numerical Physical Probability Statistics and information sciences sciences,] URL

David Groß, Michaela Klauck, Timo P. Gros, Marcel Steinmetz, Jörg Hoffmann, and Stefan Gumhold. Glyph-Based Visual Analysis of Q-Leaning Based Action Policy Ensembles on Racetrack. In Ebad Banissi, Anna Ursyn, Mark W. McK. Bannatyne, João Moura Pires, Nuno Datia, Kawa Nazemi, Boris Kovalerchuk, Razvan Andonie, Minoru Nakayama, Filippo Sciarrone, Weidong Huang, Quang Vinh Nguyen, Mabule Samuel Mabakane, Adrian Rusu, Marco Temperini, Urska Cvek, Marjan Trutschl, Heimo Müller, Harri Siirtola, Wai Lok Woo, Rita Francese, Veronica Rossano, Tania Di Mascio, Fatma Bouali, Gilles Venturini, Sebastian Kernbach, Delfina Malandrino, Rocco Zaccagnino, Jian J. Zhang, Xiaosong Yang, and Vladimir Geroimenko (Eds.), 26th International Conference Information Visualisation, IV 2022, Vienna, Austria, July 19-22, 2022, 1--10, IEEE, 2022. [PUMA: topic_visualcomputing Action Analysis Based Glyph-Based Policy Q-Leaning Racetrack Visual] URL

Fabian Erichsmeier, Maksim Kukushkin, Johannes Fiedler, Matthias Enders, Simon Goertz, Martin Bogdan, Thomas Schmid, and Reinhard Kaschuba. Automating the purity analysis of oilseed rape through usage of hyperspectral imaging. In Dag Heinemann, and GerritEditors Polder (Eds.), Photonic Technologies in Plant and Agricultural Science, 21, SPIE, 2024. [PUMA: Automating analysis hyperspectral imaging oilseed purity rape]

Sophie Adama, and Martin Bogdan. Assessing consciousness in patients with disorders of consciousness using soft-clustering. Brain Inform., (10)1:16, July 2023. [PUMA: Brain-computer Complexity Connectivity Consciousness Disorders Electroencephalogram Soft-clustering Spectral Zno analysis consciousness interface]

Sophie Adama, and Martin Bogdan. Sleep analysis in a CLIS patient using soft-clustering: a case study. Ciaco - i6doc.com, Louvain-la-Neuve (Belgium), 2023. [PUMA: CLIS Sleep Zno analysis soft-clustering]

Sophie Adama, and Martin Bogdan. Application of soft-clustering to assess consciousness in a CLIS patient. Brain Sci., (13)1:65, MDPI AG, December 2022. [PUMA: analysis completely complexity connectivity consciousness electrocorticogram extraction features locked-in soft-clustering spectral syndrome zno]

Jules Scholler, Joel Jonsson, Tomás Jordá-Siquier, Ivana Gantar, Laura Batti, Bevan L Cheeseman, Stéphane Pagès, Ivo F Sbalzarini, and Christophe M Lamy. Efficient image analysis for large-scale next generation histopathology using pAPRica. bioRxiv, January 2023. [PUMA: Efficient Yaff analysis generation histopathology image large-scale {pAPRica}]

Parvaneh Joharinad, and Jürgen Jost. Mathematical principles of topological and geometric data analysis. Springer International Publishing, Cham, 2023. [PUMA: Mathematical analysis data geometric topological]

Dominic Windisch, Jeffrey Kelling, Guido Juckeland, and André Bieberle. Real-time data processing for ultrafast X-ray computed tomography using modular CUDA based pipelines. Computer Physics Communications, (287):108719, 2023. [PUMA: High-speed Xack analysis imaging pipeline processing stream] URL

Peter Uhrig, Elinor Payne, Irina Pavlova, Ilya Burenko, Nathan Dykes, Mary Baltazani, Evie Burrows, Scott Hale, Philip Torr, and Anna Wilson. Studying time conceptualisation via speech, prosody, and hand gesture: interweaving manual and computational methods of analysis. Gesture and Speech in Interaction Conference (GeSpIn 2023), 2023. [PUMA: Yaff analysis computational conceptualisation gesture hand interweaving manual prosody speech time]

Annika Reinke, Minu D Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A Emre Kavur, Tim Rädsch, Carole H Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A Hashimoto, Michael M Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L Martel, Erik Meijering, Bjoern Menze, Karel G M Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I Sánchez, Shravya Shetty, Ronald M Summers, Abdel A Taha, Aleksei Tiulpin, Sotirios A Tsaftaris, Ben Van Calster, Gaël Varoquaux, Ziv R Yaniv, Paul F Jäger, and Lena Maier-Hein. Understanding metric-related pitfalls in image analysis validation. Nat. Methods, (21)2:182--194, Springer Science and Business Media LLC, February 2024. [PUMA: Zno analysis image pitfalls validation]

Milad Alshomary, Timon Gurcke, Shahbaz Syed, Philipp Heinisch, Maximilian Spliethöver, Philipp Cimiano, Martin Potthast, and Henning Wachsmuth. Key Point Analysis via Contrastive Learning and Extractive Argument Summarization. In Khalid Al-Khatib, Yufang Hou, and Manfred Stede (Eds.), 8th Workshop on Argument Mining (ArgMining 2021) at EMNLP, 184--189, Association for Computational Linguistics, November 2021. [PUMA: Analysis Argument Contrastive Extractive Key Learning Point Summarization Zno]

Sebastian Bischoff, Niklas Deckers, Marcel Schliebs, Ben Thies, Matthias Hagen, Efstathios Stamatatos, Benno Stein, and Martin Potthast. The Importance of Suppressing Domain Style in Authorship Analysis. CoRR, (abs/2005.14714)May 2020. [PUMA: Analysis Authorship Domain Importance Style Suppressing Zno] URL