FakeRotLib: expedient non-canonical amino acid parameterization in Rosetta. Cold Spring Harbor Laboratory, March 2025. [PUMA: FakeRotLib Rosetta nopdf xack] URL
Counterfactual Query Rewriting to Use Historical Relevance Feedback. In Claudia Hauff, Craig Macdonald, Dietmar Jannach, Gabriella Kazai, Franco Maria Nardini, Fabio Pinelli, Fabrizio Silvestri, and Nicola Tonellotto (Eds.), Advances in Information Retrieval, 138--147, Springer Nature Switzerland, Cham, 2025. [PUMA: Feedback Query_Rewriting nopdf]
Visual Sampling Behavior Does not Explain Risk Perception: A Data-Driven xAI Investigation. Proceedings of the 17th International Conference on Automotive User Interfaces and Interactive Vehicular Applications, Association for Computing Machinery, New York, NY, USA, 2025. [PUMA: nopdf] URL
Corpus Subsampling: Estimating the Effectiveness of Neural Retrieval Models on Large Corpora. Advances in Information Retrieval: 47th European Conference on Information Retrieval, ECIR 2025, Lucca, Italy, April 6–10, 2025, Proceedings, Part I, 453–471, Springer-Verlag, Berlin, Heidelberg, 2025. [PUMA: Evaluation Green IR Retrieval nopdf neural] URL
Exploring Problem-Solving-Strategies. Informatics in Schools. Innovative Approaches to Computer Science Teaching and Learning: 17th International Conference on Informatics in Schools: Situation, Evolution, and Perspectives, ISSEP 2024, Budapest, Hungary, October 28–30, 2024, Proceedings, (15228)732025. [PUMA: nopdf]
Chapter 5 - Artificial intelligence (AI) enhanced nanomotors and active matter. In Yuebing Zheng, and Zilong Wu (Eds.), Intelligent Nanotechnology, 113-144, Elsevier, 2023. [PUMA: Active_particles Feedback_control Machine_learning Multi_agent_reinforcement_learning Optical_control Reinforcement_learning nopdf] URL
On the Reliability of Automatic Volume Delineation in Low-Contrast 18 F FMISO-PET Imaging. Molecular Radio-Oncology, 175--187, Springer Berlin Heidelberg, 2016. [PUMA: nopdf]
The Fiji Updater, My favorite image analysis tool, by Neubias members. Imaging and Microscopy, March 2021Wiley Analytical Science, 2021. [PUMA: nopdf]
Image Guided orthotopic Tumor Models in Small Animals. STRAHLENTHERAPIE UND ONKOLOGIE, (191):S24--S25, 2015. [PUMA: nopdf]
Optimisation and Validation of a Swarm Intelligence Based Segmentation Algorithm for Low Contrast Positron Emission Tomography. 2014. [PUMA: nopdf]
Swarm intelligence allows automatic volume analysis basing on low contrast 18 F-fluoromisonidazole-PET of head and neck cancer patients. 2013. [PUMA: nopdf]
Usefulness of voxel-wise Pearson correlation coefficient for reproducibility and repeatability measurements in PET. Nuklearmedizin, 2012. [PUMA: nopdf]
Mapping Glacier Basal Sliding with Beamforming and Artificial Intelligence. EGU General Assembly Conference Abstracts, EGU22--6948, 2022. [PUMA: nopdf]
Automatic Classification of System Logs. International Supercomputing Conference, Frankfurt, Germany, June 2018. [PUMA: nopdf]
Prediction of tissue and clinical thrombectomy outcome in acute ischaemic stroke using deep learning. In Masud Husain (Eds.), Brain, awaf013, January 2025. [PUMA: biomarker cdss cnn computer_vision deep_learning neuroimaging neurology nopdf topic_lifescience xack yaff] URL
Taking the pulse of the Amazon rainforest by fusing multitemporal Sentinel 1 and 2 data for advanced deep-learning. EGU General Assembly Conference Abstracts, EGU21-3749, 2021. [PUMA: nopdf]
Event Pattern Identification in Anonymized System Logs. International Supercomputing Conference (ISC), Frankfurt, Germany, June 2017. [PUMA: nopdf]
Performance of rainwater tanks for runoff reduction under climate change scenarios: a case study in Brazil. Urban Water Journal, (17)10:912-922, Taylor & Francis, 2020. [PUMA: nopdf]
Deutsches Netzwerk für Bioinformatik Infrastruktur, de. NBI, RNA Bioinformatics Center-Leipzig. Professur für Bioinformatik, Institut für Informatik, Universität Leipzig, 2022. [PUMA: Bioinformatics Bioinformatik Infrastruktur Netzwerk RNA nopdf zno]
Trackastra: Transformer-based cell tracking for live-cell microscopy. European Conference on Computer Vision, 467--484, 2024. [PUMA: ML_Spatial_Understanding imported nopdf]
Accelerator Programming Using Directives: 8th International Workshop, WACCPD 2021, Virtual Event, November 14, 2021, Proceedings. In Sridutt Bhalachandra, Christopher Daley, and Verónica Melesse Vergara (Eds.), Springer-Verlag, Berlin, Heidelberg, 2021. [PUMA: 2021 Accelerator Programming WACCPD imported nopdf zno]
Tverberg Partition Graphs. SIAM Journal on Discrete Mathematics, (39)2:863--880, 2025. [PUMA: Partition Tverberg nopdf graphs]
Topological foundations, hypercomplexes and homology. Mathematics of Data, 15--64, Springer International Publishing, Cham, 2023. [PUMA: Topological foundations homology hypercomplexes nopdf]
The Laplace operator and the geometry of graphs. Mathematics of Data, 83--113, Springer International Publishing, Cham, 2023. [PUMA: Laplace geometry graphs nopdf operator]
Nonlinear Schemes: Clustering, Feature Extraction and Dimension Reduction. Mathematical Principles of Topological and Geometric Data Analysis, 193–226, Springer International Publishing, 2023. [PUMA: Clustering Dimension Extraction Nonlinear Reduction nopdf] URL
Metric spaces and manifolds. Mathematics of Data, 115--164, Springer International Publishing, Cham, 2023. [PUMA: Metric manifolds nopdf spaces]
Metrics and curvature. Mathematics of Data, 253--270, Springer International Publishing, Cham, 2023. [PUMA: Metrics curvature nopdf]
Mathematical principles of topological and geometric data analysis. Springer International Publishing, Cham, 2023. [PUMA: Mathematical analysis data geometric nopdf topological]
Manifold learning, the scheme of Laplacian eigenmaps. Mathematics of Data, 227--251, Springer International Publishing, Cham, 2023. [PUMA: Laplacian Manifold eigenmaps learning nopdf]
Logics in Artificial Intelligence: 18th European Conference, JELIA 2023, Dresden, Germany, September 20--22, 2023, Proceedings. In Sarah Gaggl, Maria Vanina Martinez, and Magdalena Ortiz (Eds.), Lecture notes in computer science, Springer Nature Switzerland, Cham, 2023. [PUMA: AI Intelligence Logics in nopdf artificial]
Linear methods: Kernels, variations, and averaging. Mathematics of Data, 165--191, Springer International Publishing, Cham, 2023. [PUMA: Linear methods nopdf]
Proceedings 39th international conference on logic programming. Electron. Proc. Theor. Comput. Sci., (385):321--323, Open Publishing Association, September 2023. [PUMA: logic nopdf programming]
Toward an Automated Pipeline for a Browser-Based, City-Scale Mobile 4D VR Application Based on Historical Images. In Florian Niebling, Sander Münster, and Heike Messemer (Eds.), Research and Education in Urban History in the Age of Digital Libraries, 106--128, Springer International Publishing, Cham, 2021. [PUMA: 4D Application Browser-Based City-Scale Historical Images Mobile Pipeline VR nopdf automated]
Rules and Reasoning: 7th International Joint Conference, RuleML+ RR 2023, Oslo, Norway, September 18--20, 2023, Proceedings. (14244)Springer Nature, 2023. [PUMA: 2023 RR RuleML nopdf]
An ensemble approach for histopathological classification of vulvar cancer. In John E Tomaszewski, and Aaron D Ward (Eds.), Medical Imaging 2023: Digital and Computational Pathology, 40, SPIE, April 2023. [PUMA: approach cancer classification ensemble histopathological nopdf vulvar]
AI in Education: Educational Technology and AI. In Inka Knappertsbusch, and Kai Gondlach (Eds.), Work and AI 2030: Challenges and Strategies for Tomorrow's Work, 353--360, Springer Fachmedien Wiesbaden, Wiesbaden, 2023. [PUMA: AI Educational Technology nopdf] URL
On optimizing morphological neural networks for hyperspectral image classification. In Wolfgang Osten (Eds.), Sixteenth International Conference on Machine Vision (ICMV 2023), (13072):1307202, SPIE, 2024. [PUMA: classification computer deep hyperspectral image learning mathematical morphological morphology networks neuronal nopdf remote sensing vision] URL
Automating the purity analysis of oilseed rape through usage of hyperspectral imaging. In Dag Heinemann, and GerritEditors Polder (Eds.), Photonic Technologies in Plant and Agricultural Science, 21, SPIE, 2024. [PUMA: Automating analysis hyperspectral imaging nopdf oilseed purity rape]
Effectiveness and Acceptance of Conversational Agent-based Psychotherapy for Depression and Anxiety Treatment: Methodological Literature Review. February 2024. [PUMA: imported nopdf]
From Guesswork to Game Plan: Exploring Problem-Solving-Strategies in a Machine Learning Game. In Zsuzsa Pluhár, and Bence Gaál (Eds.), Informatics in Schools. Innovative Approaches to Computer Science Teaching and Learning, 73--84, Springer Nature Switzerland, Cham, 2025. [PUMA: imported nopdf]
Fitch Graph Completion. Computing and Combinatorics, 225–237, Springer Nature Switzerland, December 2023. [PUMA: Completion Fitch Graph nopdf] URL
Computational History: Challenges and Opportunities of Formal Approaches. Journal of Social Computing, (4)3:232–242, Institute of Electrical and Electronics Engineers (IEEE), September 2023. [PUMA: Challenges Computational History Opportunities nopdf] URL
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. Journal of Computational Biology, (31)6:549--563, Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New~…, 2024. [PUMA: imported nopdf]
On the Realisability of Chemical Pathways. Bioinformatics Research and Applications: 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9--12, 2023, Proceedings, (14248):409, 2023. [PUMA: imported nopdf]
Melanoma development: linking tRNA composition to mRNA expression. EXPERIMENTAL DERMATOLOGY, (33)32024. [PUMA: imported nopdf]
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure nopdf] URL
The development of representations in artificial agents. Scientific Advisory Board (SAB) Meeting, 2023. [PUMA: imported nopdf]
Representation in machine learning: A neuro-cognitive approach. French-German Research and Innovation Network for AI workshop, 2022. [PUMA: imported nopdf]
Modelling the olfactory system using spiking neural networks with synaptic dynamics to study drifting in electronic noses. Scientific Advisory Board (SAB) Meeting, 2023. [PUMA: imported nopdf]
Machine learning in computational microscopy. 11th IMPRS NeuroCom Summer School, 2022. [PUMA: imported nopdf]