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Whitney's connectivity inequalities for directed hypergraphs. The Art of Discrete and Applied Mathematics, (5)1:P1--01, 2022. [PUMA: imported zno]
Virus evolution on fitness landscapes. Viral Fitness and Evolution: Population Dynamics and Adaptive Mechanisms, 1--94, Springer, 2023. [PUMA: imported zno]
Unique least common ancestors and clusters in directed acyclic graphs. Conference on Algorithms and Discrete Applied Mathematics, 148--161, 2024. [PUMA: Zno imported]
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis. Journal of Personalized Medicine, (13)6:924, MDPI, 2023. [PUMA: Zno imported]
The theory of gene family histories. Comparative Genomics: Methods and Protocols, 1--32, Springer, 2024. [PUMA: Zno imported]
The six stages of the convergence of the periodic system to its final structure. Communications Chemistry, (6)1:87, Nature Publishing Group UK London, 2023. [PUMA: Zno imported]
The expansion of chemical space in 1826 and in the 1840s prompted the convergence to the periodic system. Proceedings of the National Academy of Sciences, (119)30:e2119083119, National Acad Sciences, 2022. [PUMA: Zno imported]
Temperature-Dependent tRNA Modifications in Bacillales. International Journal of Molecular Sciences, (25)16:8823, MDPI, 2024. [PUMA: Zno imported]
Taking identity-by-descent analysis into the wild: Estimating realized relatedness in free-ranging macaques. bioRxiv, Cold Spring Harbor Laboratory Preprints, 2024. [PUMA: Zno imported]
Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes. RNA, (28)4:551--567, Cold Spring Harbor Lab, 2022. [PUMA: Zno imported]
StandEnA: a customizable workflow for standardized annotation and generating a presence--absence matrix of proteins. Bioinformatics Advances, (3)1:vbad069, Oxford University Press, 2023. [PUMA: Zno imported]
Sorting signed permutations by tandem duplication random loss and inverse tandem duplication random loss. Advances in Applied Mathematics, (161):102757, Elsevier, 2024. [PUMA: Zno imported]
RNA interaction format: a general data format for RNA interactions. Bioinformatics, (39)11:btad665, Oxford University Press, 2023. [PUMA: Zno imported]
RNA design principles for riboswitches that regulate RNase P-mediated tRNA processing. Riboregulator Design and Analysis, 179--202, Springer, 2022. [PUMA: Zno imported]
REvolutionH-tl: Reconstruction of Evolutionary Histories tool. RECOMB International Workshop on Comparative Genomics, 89--109, 2024. [PUMA: Zno imported]
Reaction rebalancing: a novel approach to curating reaction databases. Journal of Cheminformatics, (16)1:82, Springer, 2024. [PUMA: Zno imported]
Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-) orthologs. Frontiers in Bioinformatics, (3):1322477, Frontiers Media SA, 2023. [PUMA: Zno imported]