Publications

Ali Al-Fatlawi, Martin Menzel, and Michael Schroeder. Is Protein BLAST a thing of the past?. Nature communications, (14)1Nature Publishing Group, Dec 11, 2023. [PUMA: topic_lifescience xack yaff]

Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, and Michael Schroeder. Netrank: network-based approach for biomarker discovery. BMC bioinformatics, (24)1BioMed Central, London, Jul 29, 2023. [PUMA: topic_lifescience xack yaff]

Jingyue Zhuge, Christian Georg Mayr, Anand Subramoney, and David Kappel. Single Train Multi Deploy on Topology Search Spaces using Kshot-Hypernet. 2024. [PUMA: FIS_scads imported topic_neuroinspired xack yaff]

Jan Frenzel, Apurv Deepak Kulkarni, Sebastian Döbel, Bert Wesarg, Maximilian Knespel, and Holger Brunst. FROOM: A Framework of Operators for OTF2 Modification. Proceedings of 2023 SC Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC Workshops 2023, 1403–1411, Association for Computing Machinery (ACM), New York, United States of America, Nov 12, 2023. [PUMA: FIS_scads area_architectures xack yaff]

Guilherme Korol, Michael Guilherme Jordan, Mateus Beck Rutzig, Jeronimo Castrillon, and Antonio Carlos Schneider Beck. Pruning and Early-Exit Co-Optimization for CNN Acceleration on FPGAs. 2023 Design, Automation and Test in Europe Conference and Exhibition, DATE 2023 - Proceedings, Institute of Electrical and Electronics Engineers Inc., United States of America, 2023. [PUMA: Adaptive CNN Computing Edge FIS_scads FPGA Inference topic_software xack yaff] URL

Guilherme Korol, Michael Guilherme Jordan, Mateus Beck Rutzig, Jeronimo Castrillon, and Antonio Carlos Schneider Beck. Design Space Exploration for CNN Offloading to FPGAs at the Edge. In Fernanda Kastensmidt, Ricardo Reis, Aida Todri-Sanial, Hai Li, and Carolina Metzler (Eds.), 2023 IEEE Computer Society Annual Symposium on VLSI, ISVLSI 2023 - Proceedings, IEEE Computer Society, United States of America, 2023. [PUMA: CNN Computing Edge FIS_scads FPGA IoT Offloading topic_software xack yaff] URL

Lucas Lange, Maurice-Maximilian Heykeroth, and Erhard Rahm. Assessing the Impact of Image Dataset Features on Privacy-Preserving Machine Learning. arXiv preprint arXiv:2409.01329, arXiv, September 2024. [PUMA: (cs.CR), (cs.CV), (cs.LG), Computer Cryptography FOS: Learning Machine Pattern Recognition Security Vision and area_bigdata area_responsibleai ep information sciences xack yaff]

Fabian Liessmann, Lukas von Bredow, Jens Meiler, and rahm Liebscher, Ines. Targeting adhesion G protein-coupled receptors. Current status and future perspectives. Structure, Elsevier, November 2024. [PUMA: ADGRG1; ADGRG2; ADGRG3; ADGRG5; ADGRG6; ADGRG7; GPCRs; GPR114; GPR126; GPR128; GPR56; GPR64; GPR97; adhesion area_bigdata discovery; drug ep ligands; molecules; small structure topic_lifescience xack yaff]

Chiara Molinari, Leonardo Solaini, Francesca Rebuzzi, Gianluca Tedaldi, Davide Angeli, Elisabetta Petracci, Dusan Prascevic, Jan Ewald, Erhard Rahm, Matteo Canale, and others. Genomic events stratifying prognosis of early gastric cancer. Gastric Cancer, 1--12, Springer, 2024. [PUMA: area_bigdata ep imported topic_lifescience xack yaff]

Benjamin Uhrich, Tim Häntschel, Martin Schäfer, and Erhard Rahm. Neural Diffusion Graph Convolutional Network for Predicting Heat Transfer in Selective Laser Melting. International Workshop on Combinatorial Image Analysis, 150--164, 2024. [PUMA: area_bigdata ep imported topic_physchemistry xack yaff]

Benjamin Uhrich, Nils Pfeifer, Martin Schäfer, Oliver Theile, and Erhard Rahm. Physics-informed deep learning to quantify anomalies for real-time fault mitigation in 3D printing. Applied Intelligence, (54)6:4736--4755, Springer, 2024. [PUMA: area_bigdata ep imported topic_physchemistry xack yaff]

Victor Christen, Daniel Obraczka, Marvin Hofer, Martin Franke, and Erhard Rahm. Graph-based Active Learning for Entity Cluster Repair. arXiv preprint arXiv:2401.14992, 2024. [PUMA: area_bigdata ep imported topic_graph xack yaff]

Lucas Lange, Nils Wenzlitschke, and Erhard Rahm. Generating Synthetic Health Sensor Data for Privacy-Preserving Wearable Stress Detection. Sensors, (24)10:3052, MDPI, 2024. [PUMA: area_bigdata area_responsibleai ep imported xack yaff]

Marvin Hofer, Johannes Frey, and Erhard Rahm. Towards self-configuring knowledge graph construction pipelines using llms-a case study with rml. Fifth International Workshop on Knowledge Graph Construction@ ESWC2024, 2024. [PUMA: area_bigdata ep imported topic_graph xack yaff]

Jacob Pollack, Hanna Köpcke, and Erhard Rahm. Intermediate Fusion for Multimodal Product Matching. 2024. [PUMA: area_bigdata ep imported unit_transfer xack yaff]

Antonia Sophia Peter, Dieter S Hoffmann, Johannes Klier, Christina M Lange, Johanna Möller, Victoria Most, Christina K Wüst, Max Beining, Sevilay Gülesen, Hannes Junker, Jens Meiler, Clara Schoeder, and others. Strategies of rational and structure-driven vaccine design for Arenaviruses. Infection, Genetics and Evolution, 105626, Elsevier, 2024. [PUMA: imported xack yaff]

Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, Sergey Lyskov, Rocco Moretti, Torben Schiffner, Jens Meiler, and Clara T. Schoeder. Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. In Joanna Slusky (Eds.), PLOS Computational Biology, (20)3:e1011939, Public Library of Science (PLoS), March 2024. [PUMA: imported topic_lifescience xack yaff] URL

Shan Jiang, Zhaoqian Su, Nathaniel Bloodworth, Yunchao Liu, Cristina Martina, David G. Harrison, and Jens Meiler. Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA0201. Cold Spring Harbor Laboratory, November 2024. [PUMA: imported topic_lifescience xack yaff] URL

Moritz Ertelt, Rocco Moretti, Jens Meiler, and Clara T. Schoeder. Self-supervised machine learning methods for protein design improve sampling, but not the identification of high-fitness variants. Cold Spring Harbor Laboratory, June 2024. [PUMA: imported topic_lifescience xack yaff] URL

Abibe Useini, Inken Kaja Schwerin, Georg Künze, and Norbert Sträter. Structural Studies on the Binding Mode of Bisphenols to PPARγ. Biomolecules, (14)6:640, MDPI AG, May 2024. [PUMA: imported topic_lifescience xack yaff] URL