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The accuracy of absolute differential abundance analysis from relative count data

, and . PLoS Comput. Biol., 18 (7): e1010284 (July 2022)

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The bulk and the extremes of minimal spanning acycles and persistence diagrams of random complexes, , and . (2020)Higher Order Bipartiteness vs Bi-Partitioning in Simplicial Complexes, and . (2024)A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors, , , , , , and . Bioinformatics, 38 (1): 22--29 (September 2021)Learning Subspaces of Different Dimensions, , , , and . Journal of Computational and Graphical Statistics, 31 (2): 337--350 (2022)Synchrony and idiosyncrasy in the gut microbiome of wild baboons, , , , , , , , , and 13 other author(s). Nature Ecology and Evolution, 6 (7): 955--964 (July 2022)Funding Information: We thank J. Altmann for her essential role in stewarding the Amboseli Baboon Project and in collecting and maintaining the faecal samples used in this manuscript. This work was supported by the National Science Foundation (NSF) and the National Institutes of Health (NIH), especially NSF Rules of Life Award DEB1840223 (E.A.A. and J.A.G.) and the National Institute on Aging R21AG055777 (E.A.A. and R.B.) and NIH R01AG053330 (E.A.A.), NIH R01AG071684 (E.A.A.) and NIHR35 GM128716 (R.B.), the Duke University Population Research Institute P2C-HD065563 (pilot to J.T.), the University of Notre Dame’s Eck Institute for Global Health (E.A.A.) and the Notre Dame Environmental Change Initiative (E.A.A.). Since 2000, long-term data collection in Amboseli has been supported by NSF and NIH, including IOS1456832 (S.C.A.), IOS1053461 (E.A.A.), DEB1405308 (J.T.), IOS0919200 (S.C.A.), DEB0846286 (S.C.A.), DEB0846532 (S.C.A.), IBN0322781 (S.C.A.), IBN0322613 (S.C.A.), BCS0323553 (S.C.A.), BCS0323596 (S.C.A.), P01AG031719 (S.C.A.), R21AG049936 (J.T. and S.C.A.), R03AG045459 (J.T. and S.C.A.), R01AG034513 (S.C.A.), R01HD088558 (J.T.) and P30AG024361 (S.C.A.). We also especially thank the members of the Maasai pastoralist communities in the Amboseli-Longido areas. We thank the Kenya Wildlife Service, Kenya’s Wildlife Research & Training Institute, the National Council for Science, Technology and Innovation and the National Environment Management Authority for permission to conduct research and collect biological samples in Kenya. We also thank the University of Nairobi, Institute of Primate Research, National Museums of Kenya, the Enduimet Wildlife Management Area, Ker & Downey Safaris, Air Kenya and Safarilink for their cooperation and assistance in the field. We thank K. Pinc for managing and designing the database. We also thank T. Voyles, A. Dumaine, Y. Zhang, M. Rao, T. Vilgalys, A. Lea, N. Snyder-Mackler, P. Durst, J. Zussman, G. Chavez and R. Debray for contributing to faecal sample processing. Complete acknowledgements for the ABRP can be found online at https://amboselibaboons.nd.edu/acknowledgements/ . Publisher Copyright: © 2022, The Author(s), under exclusive licence to Springer Nature Limited..Concentration inequalities and optimal number of layers for stochastic deep neural networks, and . (2023)Ergodic Theorems for Dynamic Imprecise Probability Kinematics, and . (2022)Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes, , , , and . Journal of Machine Learning Research, 23 (7): 1--42 (2022)Representing fields without correspondences: the lifted Euler characteristic transform, and . Journal of Applied and Computational Topology, (August 2023)Generalized Bayes approach to inverse problems with model misspecification, , and . Inverse Problems, 39 (10): 105011 (September 2023)