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Federated learning on transcriptomic data: Model quality and performance trade-offs, , , and . (2024)Genomic events stratifying prognosis of early gastric cancer, , , , , , , , , and 1 other author(s). Gastric Cancer, (2024)The landscape of toxic intermediates in the metabolic networks of pathogenic fungi reveals targets for antifungal drugs, , , , , , , , , and 1 other author(s). (September 2021)Visible neural networks for multi-omics integration: a critical review, , , , , , , , and . bioRxiv, (2024)Beyond the black box with biologically informed neural networks, , , and . Nature Reviews Genetics, (Mar 4, 2025)Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis, , , , , and . PLoS Comput. Biol., 17 (12): e1009645 (December 2021)A generalized and versatile framework to train and evaluate autoencoders for biological representation learning and beyond: AUTOENCODIX, , , , and . (December 2024)Including glutamine in a resource allocation model of energy metabolism in cancer and yeast cells, , , and . npj Systems Biology and Applications, (July 2024)Zero-Shot, Big-Shot, Active-Shot - How to estimate cell confluence, lazily, , , , and . bioRxiv, (2025)