Publications

Martin Reinhardt, Karin Mora, Gunnar Brandt, Tejas Morbagal Harish, David Montero, Chaonan Ji, Teja Kattenborn, Francesco Martinuzzi, Clemens Mosig, and Miguel D Mahecha. DeepFeatures: Remote sensing beyond spectral indices. EGU General Assembly Conference Abstracts, 18852, 2024. [PUMA: zno]

Jakobus Möhring, Clemens Mosig, Yan Cheng, Miguel Mahecha, Oscar Perez Priego, Mirela Beloiu, Michele Volpi, Stéphanie Horion, Hooman Latifi, Elham Shafeian, Fabian Fassnacht, David Montero, Katarzyna Zielewska-Büttner, Etienne Laliberté, Myriam Cloutier, Marie-Therese Schmehl, Annett Frick, Helene Müller-Landau, KC Cushman, Joseph Hupy, Qin Ma, Yanjun Su, Pratima Khatri-Chhetri, Stefan Kruse, Julian Frey, Felix Schiefer, Samuli Junttila, Alastair Potts, Andreas Uhl, Christian Rossi, and Teja Kattenborn. Delineating Standing Deadwood in High-Resolution RGB Drone Imagery. EGU24-190252024. [PUMA: zno]

Yan Cheng, Stefan Oehmcke, Clemens Mosig, Beloiu Mirela, Teja Kattenborn, Christin Abel, Dimitri Gominski, Thomas Nord-Larsen, Rasmus Fensholt, and Stephanie Horion. High-resolution mapping of tree mortality in European forests. EGU24-20213Copernicus Meetings, 2024. [PUMA: zno]

Teja Kattenborn, Clemens Mosig, Kc Pratima, Julian Frey, Oscar Perez-Priego, Felix Schiefer, Yan Cheng, Alastair Potts, Janusch Jehle, Mirko Mälicke, and Miguel Mahecha. deadtrees.earth - an open, dynamic database for accessing, contributing, analyzing, and visualizing remote sensing-based tree mortality data. EGU24-155022024. [PUMA: zno]

Clemens Mosig, Randy Bush, Cristel Pelsser, Thomas C Schmidt, and Matthias Wählisch. Revisiting Recommended BGP Route Flap Damping Configurations. (5):22, 2021. [PUMA: zno]

Melanie Brandmeier, Maximilian Hell, Eya Cherif, and Andreas Nüchter. Synergetic use of Sentinel-1 and Sentinel-2 data for large-scale Land Use/Land Cover Mapping. EGU General Assembly Conference Abstracts, EGU22-4300, 2022. [PUMA: zno]

Eya Cherif, Hannes Feilhauer, Katja Berger, Michael Ewald, Tobias B Hank, Kyle R Kovach, Philip A Townsend, Zhihui Wang, and Teja Kattenborn. From spectra to functional plant traits: Transferable multi-trait models from heterogeneous and sparse data. EGU General Assembly Conference Abstracts, EGU-10901, 2023. [PUMA: xack]

Melanie Brandmeier, and Eya Cherif. Taking the pulse of the Amazon rainforest by fusing multitemporal Sentinel 1 and 2 data for advanced deep-learning. EGU General Assembly Conference Abstracts, EGU21-3749, 2021. [PUMA: nopdf]

Chaonan Ji, Tonio Fincke, Vitus Benson, Gustau Camps-Valls, Miguel-Angel Fernandez-Torres, Fabian Gans, Guido Kraemer, Francesco Martinuzzi, David Montero, Karin Mora, Oscar J Pellicer-Valero, Claire Robin, Maximilian Soechting, Melanie Weynants, and Miguel D Mahecha. DeepExtremeCubes: Integrating Earth system spatio-temporal data for impact assessment of climate extremes. arXiv preprint arXiv:2406.18179, 2024. [PUMA: yaff]

Tristan Williams, Francesco Martinuzzi, Gustau Camps-Valls, and Miguel D Mahecha. Evaluating Forest Resilience in Europe with Deep Learning Persistence Analysis. EGU24-20805Copernicus Meetings, 2024. [PUMA: yaff]

David Montero, Miguel D Mahecha, Francesco Martinuzzi, César Aybar, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Jesús Anaya, and Sebastian Wieneke. Estimating Gross Primary Production via Recurrent Neural Networks: A comparative analysis. EGU24-6773Copernicus Meetings, 2024. [PUMA: yaff]

David Montero, César Aybar, Miguel D Mahecha, Francesco Martinuzzi, Maximilian Söchting, and Sebastian Wieneke. A standardized catalogue of spectral indices to advance the use of remote sensing in Earth system research. Scientific Data, (10)1:1-20, Nature Publishing Group, 2023. [PUMA: yaff]

D Montero, G Kraemer, A Anghelea, CA Camacho, G Brandt, G Camps-Valls, F Cremer, I Flik, F Gans, S Habershon, C Ji, T Kattenborn, L Martínez-Ferrer, F Martinuzzi, M Reinhardt, M Söchting, K Teber, and M Mahecha. Data cubes for earth system research: Challenges ahead. EarthArXiv (California Digital Library), 2023. [PUMA: xack]

Francesco Martinuzzi, Miguel D Mahecha, Gustau Camps-Valls, David Montero, Tristan Williams, and Karin Mora. Impact Predictability: Exploring Extremes in Biosphere Dynamics with Recurrent Neural Networks. EGU24-9569Copernicus Meetings, 2024. [PUMA: yaff]

Gustau Camps-Valls, Miguel-Ángel Fernández-Torres, Kai-Hendrik Cohrs, Adrian Höhl, Andrea Castelletti, Aytac Pacal, Claire Robin, Francesco Martinuzzi, Ioannis Papoutsis, Ioannis Prapas, Jorge Pérez-Aracil, Katja Weigel, Maria Gonzalez-Calabuig, Markus Reichstein, Martin Rabel, Matteo Giuliani, Miguel Mahecha, Oana-Iuliana Popescu, Oscar J Pellicer-Valero, Said Ouala, Sancho Salcedo-Sanz, Sebastian Sippel, Spyros Kondylatos, Tamara Happé, and Tristan Williams. AI for Extreme Event Modeling and Understanding: Methodologies and Challenges. 2024. [PUMA: yaff]

Ranjan Anantharaman, Anas Abdelrehim, Francesco Martinuzzi, Sharan Yalburgi, Elliot Saba, Keno Fischer, Glen Hertz, Pepijn de Vos, Chris Laughman, Yingbo Ma, Viral Shah, Alan Edelman, and Chris Rackauckas. Composable and reusable neural surrogates to predict system response of causal model components. 2021. [PUMA: zno]

David Montero, Miguel D Mahecha, Francesco Martinuzzi, César Aybar, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Jesús Anaya, and Sebastian Wieneke. Recurrent Neural Networks for Modelling Gross Primary Production. 4214-4217, IEEE, 2024. [PUMA: yaff]

Francesco Martinuzzi, Miguel D Mahecha, Gustau Camps-Valls, David Montero, Tristan Williams, and Karin Mora. Learning extreme vegetation response to climate drivers with recurrent neural networks. Nonlinear Processes in Geophysics, (31)4:535-557, Copernicus Publications, 2024. [PUMA: xack]

Sina Mehrdad, Dörthe Handorf, Ines Höschel, Khalil Karami, Johannes Quaas, Sudhakar Dipu, and Christoph Jacobi. Arctic climate response to European radiative forcing: a deep learning study on circulation pattern changes. Weather and Climate Dynamics, (5)4:1223-1268, Copernicus Publications, 2024. [PUMA: topic_earthenvironment yaff]

David Montero, Guido Kraemer, Anca Anghelea, César Aybar, Gunnar Brandt, Gustau Camps-Valls, Felix Cremer, Ida Flik, Fabian Gans, Sarah Habershon, and et al.. Earth System Data Cubes: Avenues for advancing Earth system research. Environmental Data Science, (3):e27, 2024. [PUMA: topic_earthenvironment xack yaff]

David Antony Selby, Rashika Jakhmola, Maximilian Sprang, Gerrit Grossmann, Hind Raki, Niloofar Maani, Daria Pavliuk, Jan Ewald, and Sebastian Vollmer. Visible neural networks for multi-omics integration: a critical review. bioRxiv, Cold Spring Harbor Laboratory, 2024. [PUMA: topic_lifescience yaff] URL

Maximilian Joas, Daniel Freund, Robert Haase, Erhard Rahm, and Jan Ewald. Zero-Shot, Big-Shot, Active-Shot - How to estimate cell confluence, lazily. bioRxiv, Cold Spring Harbor Laboratory, 2025. [PUMA: topic_lifescience xack yaff] URL

Sina Mahmoodi Khorandi, Siavash Ghiasvand, and Mohsen Sharifi. Reducing Load Imbalance of Virtual Clusters via Reconfiguration and Adaptive Job Scheduling. Proceedings of the 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 992--999, IEEE, Madrid, Spain, May 2017. [PUMA: zno] URL

Siavash Ghiasvand, and Florina M. Ciorba. Towards Adaptive Resilience in High Performance Computing. In E. Grosspietsch, and K. Kloeckner (Eds.), Proceedings of WiP in 25th EUROMICRO International Conference on Parallel, Distributed and Network-based Processing, (1):5--6, SEA-Publications-Austria, St. Petersburg, Russia, March 2017. [PUMA: zno]

Siavash Ghiasvand, and Florina M Ciorba. Anonymization of System Logs for Preserving Privacy and Reducing Storage. Proceedings of the 2018 Future of Information and Communications Conference (FICC), (1):440--447, Springer, Singapore, April 2018. [PUMA: zno]

Siavash Ghiasvand, and Florina M Ciorba. Event Pattern Identification in Anonymized System Logs. International Supercomputing Conference (ISC), Frankfurt, Germany, June 2017. [PUMA: nopdf]

Siavash Ghiasvand, Florina M. Ciorba, Ronny Tschuter, and Wolfgang E. Nagel. Lessons Learned from Spatial and Temporal Correlation of Node Failures in High Performance Computers. Proceedings of the 24th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP), 377--381, IEEE, Heraklion, Crete, Greece, February 2016. [PUMA: zno] URL

Siavash Ghiasvand, Florina M Ciorba, and Wolfgang E Nagel. Turning Privacy Constraints into Syslog Analysis Advantage. International Conference for High Performance Computing, Networking, Storage and Analysis (SC), Salt Lake City, Utah, USA, November 2016. [PUMA: zno] URL

Lincoln Sherpa, Sima Attar Khorasani, Rajasekar Sankar, Ralph Müller-Pfefferkorn, and Siavash Ghiasvand. KEENsight: Cloud based Collaborative Environment for Streamlining Machine Learning Development. The Fifteenth International Conference on Information, Intelligence, Systems and Applications, Crete, Greece, June 2024. [PUMA: yaff]

Tom Richard Vargis, and Siavash Ghiasvand. Assessing Anonymized System Logs Usefulness for Behavioral Analysis in RNN Models. Proceedings of the International Workshop on Data-driven Resilience Research, (3376)arXiv, Leipzig, Germany, December 2022. [PUMA: xack yaff] URL

Tom Richard Vargis, and Siavash Ghiasvand. Content-Aware Depth-Adaptive Image Restoration. Proceedings of the 29th International Conference on Automation and Computing, Sunderland, UK, January 2024. [PUMA: xack yaff] URL

Tom Richard Vargis, and Siavash Ghiasvand. A Light-weight and Unsupervised Method for Near Real-time Behavioral Analysis using Operational Data Measurement. The International Conference for High Performance Computing, Networking, Storage, and Analysis, Dallas, Texas, USA, January 2022. [PUMA: Zno] URL

Chris Rackauckas, Maja Gwozdz, Anand Jain, Yingbo Ma, Francesco Martinuzzi, Utkarsh Rajput, Elliot Saba, Viral B Shah, Ranjan Anantharaman, Alan Edelman, Shashi Gowda, Avik Pal, and Chris Laughman. Composing modeling and simulation with machine learning in Julia. 1-17, IEEE, 2022. [PUMA: zno]

Olivier C Pasche, Jonathan Wider, Zhongwei Zhang, Jakob Zscheischler, and Sebastian Engelke. Validating Deep-Learning Weather Forecast Models on Recent High-Impact Extreme Events. arXiv preprint arXiv:2404.17652, 2024. [PUMA: xack]

Kira Rehfeld, Jonathan Wider, Nadine Theisen, Martin Werner, Ullrich Köthe, and Nils Weitzel. The potential of machine learning for modeling spatio-temporal properties of water isotopologue distributions in precipitation. EGU General Assembly Conference Abstracts, EGU21-2979, 2021. [PUMA: zno]

Jonathan Wider, Jakob Kruse, Nils Weitzel, Janica C Bühler, Ullrich Köthe, and Kira Rehfeld. Towards learned emulation of interannual water isotopologue variations in General Circulation Models. Environmental Data Science, (2):e35, Cambridge University Press, 2023. [PUMA: xack]

Carlotta Ficorella, Hannah Marie Eichholz, Federico Sala, Rebeca Martínez Vázquez, Roberto Osellame, and Josef A Käs. Intermediate filaments ensure resiliency of single carcinoma cells, while active contractility of the actin cortex determines their invasive potential. New Journal of Physics, (23)8:083028, IOP Publishing, 2021. [PUMA: zno]

Hannah Marie Eichholz, Alissa Cornelis, Benjamin Wolf, Hanna Grubitzsch, Philip Friedrich, Ahmad Makky, Bahriye Aktas, Josef Alfons Käs, and Holger Stepan. Anatomy of the fetal membranes: Insights from spinning disk confocal microscopy. Archives of Gynecology and Obstetrics, (309)5:1919-1923, Springer Berlin Heidelberg, 2024. [PUMA: zno]

Federico Sala, Carlotta Ficorella, Rebeca Martinez Vazquez, Hannah Marie Eichholz, Josef A Käs, and Roberto Osellame. Rapid prototyping of 3D biochips for cell motility studies using two-photon polymerization. Frontiers in bioengineering and biotechnology, (9):664094, Frontiers Media SA, 2021. [PUMA: zno]

Taís Maria Nunes Carvalho, Francisco de Assis de Souza Filho, and Victor Costa Porto. Urban Water Demand Modeling Using Machine Learning Techniques: Case Study of Fortaleza, Brazil. Journal of Water Resources Planning and Management, (147)1:05020026, American Society of Civil Engineers, 2021. [PUMA: zno]

Taís Maria Nunes Carvalho, Francisco de Assis de Souza Filho, and Mariana Madruga de Brito. Unveiling water allocation dynamics: a text analysis of 25 years of stakeholder meetings. Environmental Research Letters, (19)4:044066, IOP Publishing, 2024. [PUMA: yaff]

VC Porto, FA Souza Filho, TMN Carvalho, RV Rocha, and RL Frota. Application of stochastic dual dynamic programming in operation optimization of the Jaguaribe-Metropolitano reservoirs system. 2019. [PUMA: zno]

Taís Maria Nunes Carvalho. Water demand modeling using machine learning techniques. 2019. [PUMA: zno]

Taís Maria Nunes Carvalho, Carla Beatriz Costa de Araújo, Walter Jhameson Xavier Pereira, and Francisco de Assis de Souza Filho. Avaliação do uso de cisternas como medida compensatória para atenuação de picos de cheia na Bacia do Pajeú utilizando o SWMM. 2017. [PUMA: zno]

TMN Carvalho, FA Souza Filho, VC Porto, GA Reis, and LZR Rolim. Integrated model of capacity expansion and operation of water supply systems including non-conventional water sources. 2019. [PUMA: zno]

Taís Maria Nunes Carvalho, Iran Eduardo Lima Neto, and Francisco de Assis Souza Filho. Uncovering the influence of hydrological and climate variables in chlorophyll-A concentration in tropical reservoirs with machine learning. Environmental Science and Pollution Research, (29)49:74967-74982, Springer Berlin Heidelberg, 2022. [PUMA: zno]

Taís Maria Carvalho, Samíria Maria Oliveira da Silva, Carla Beatriz Araújo, Renata Frota, Louise Caroline Xavier, Bárbara Bezerra, Eduarda Almeida, and Francisco de Assis de Souza Filho. Vulnerability index to COVID-19: Fortaleza, Brazil study case. Engenharia Sanitaria e Ambiental, (26):731-739, Associação Brasileira de Engenharia Sanitária e Ambiental-ABES, 2021. [PUMA: zno]

Tereza Margarida Xavier de Melo Lopes, Samiria Maria Oliveira da Silva, Lais Marques de Oliveira, Taís Maria Nunes Carvalho, Brenda Arielly Mendonça Rodrigues, and Renata Locarno Frota. Modelagem dinâmica espacial aplicada à previsão da demanda hídrica. ABRHidro-Associação Brasileira de Recursos Hidrícos, http://www. abrhidro. org. br/xxivsbrh, 2021. [PUMA: zno]

Taís Maria Nunes Carvalho, Jakob Zscheischler, Christian Kuhlicke, and Mariana Madruga de Brito. A global database of natural hazards impacts reported in the scientific literature. EGU General Assembly Conference Abstracts, 19940, 2024. [PUMA: yaff]

Brenda Lara Duarte Souza Carneiro, Francisco de Assis de Souza Filho, Taís Maria Nunes Carvalho, and João Batista Sousa Raulino. Hydrological risk of dam failure under climate change. RBRH, (27):e19, Associação Brasileira de Recursos Hídricos, 2022. [PUMA: zno]