Publications

Eli Fritz McDonald, Hope Woods, Shannon T Smith, Minsoo Kim, Clara T Schoeder, Lars Plate, and Jens Meiler. Structural comparative modeling of multi-domain F508del CFTR. Biomolecules, (12)3:471, MDPI AG, March 2022. [PUMA: VX-809; chaperones; comparative computational cystic discovery disease; drug fibrosis; folding modeling; pharmacological protein structure-based topic_lifescience]

Christopher Klapproth, Rituparno Sen, Peter F Stadler, Sven Findeiß, and Jörg Fallmann. Common features in lncRNA annotation and classification: A survey. Noncoding RNA, (7)4:77, MDPI AG, December 2021. [PUMA: classification coding extraction; feature learning lncRNA; machine problems; sequence;]

Lorenzo Maiello, Lorenzo Ball, Marco Micali, Francesca Iannuzzi, Nico Scherf, Ralf-Thorsten Hoffmann, Marcelo Gama de Abreu, Paolo Pelosi, and Robert Huhle. Automatic lung segmentation and quantification of aeration in computed tomography of the chest using 3D transfer learning. Front. Physiol., (12):725865, 2021. [PUMA: ARDS; COVID-19; Jaccard deep index; learning; lung recruitment; segmentation; transfer uNet]

Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, and Peter F Stadler. LazyB: fast and cheap genome assembly. Algorithms Mol. Biol., (16)1:8, Springer Science and Business Media LLC, June 2021. [PUMA: Anchors; Genome Illumina Nanopore Spanning Unitigs assembly; sequencing; tree;]

Céline N Heinz, Amelie Echle, Sebastian Foersch, Andrey Bychkov, and Jakob Nikolas Kather. The future of artificial intelligence in digital pathology - results of a survey across stakeholder groups. Histopathology, (80)7:1121--1127, Wiley, June 2022. [PUMA: artificial digital intelligence; pathology; survey]