Publications

Joel Troya, Daniel Fitting, Markus Brand, Boban Sudarevic, Jakob Nikolas Kather, Alexander Meining, and Alexander Hann. The influence of computer-aided polyp detection systems on reaction time for polyp detection and eye gaze. Endoscopy, (54)10:1009--1014, Georg Thieme Verlag KG, October 2022. [PUMA: topic_lifescience]

Matthias P Ebert, Nadja M Meindl-Beinker, Tobias Gutting, Martin Maenz, Johannes Betge, Nadine Schulte, Tianzuo Zhan, Philip Weidner, Elke Burgermeister, Ralf Hofheinz, Arndt Vogel, Stefan Angermeier, Claus Bolling, Maike de Wit, Ralf Jakobs, Meinolf Karthaus, Gertraud Stocker, Peter Thuss-Patience, Tobias Leidig, Timo Gaiser, Jakob N Kather, and Nicolai Haertel. Second-line therapy with nivolumab plus ipilimumab for older patients with oesophageal squamous cell cancer (RAMONA): a multicentre, open-label phase 2 trial. Lancet Healthy Longev., (3)6:e417--e427, Elsevier BV, June 2022. [PUMA: topic_lifescience]

Frederik Wessels, Max Schmitt, Eva Krieghoff-Henning, Jakob N Kather, Malin Nientiedt, Maximilian C Kriegmair, Thomas S Worst, Manuel Neuberger, Matthias Steeg, Zoran V Popovic, Timo Gaiser, Christof von Kalle, Jochen S Utikal, Stefan Fröhling, Maurice S Michel, Philipp Nuhn, and Titus J Brinker. Deep learning can predict survival directly from histology in clear cell renal cell carcinoma. PLoS One, (17)8:e0272656, August 2022. [PUMA: topic_lifescience]

Robert Noble, Dominik Burri, Cécile Le Sueur, Jeanne Lemant, Yannick Viossat, Jakob Nikolas Kather, and Niko Beerenwinkel. Spatial structure governs the mode of tumour evolution. Nat. Ecol. Evol., (6)2:207--217, Springer Science and Business Media LLC, February 2022. [PUMA: topic_lifescience]

Oliver Lester Saldanha, Philip Quirke, Nicholas P West, Jacqueline A James, Maurice B Loughrey, Heike I Grabsch, Manuel Salto-Tellez, Elizabeth Alwers, Didem Cifci, Narmin Ghaffari Laleh, Tobias Seibel, Richard Gray, Gordon G A Hutchins, Hermann Brenner, Marko van Treeck, Tanwei Yuan, Titus J Brinker, Jenny Chang-Claude, Firas Khader, Andreas Schuppert, Tom Luedde, Christian Trautwein, Hannah Sophie Muti, Sebastian Foersch, Michael Hoffmeister, Daniel Truhn, and Jakob Nikolas Kather. Swarm learning for decentralized artificial intelligence in cancer histopathology. Nat. Med., (28)6:1232--1239, Springer Science and Business Media LLC, June 2022. [PUMA: topic_lifescience]

Lucas Schneider, Eva Krieghoff-Henning, Sara Laiouar-Pedari, Sara Kuntz, Achim Hekler, Jakob N Kather, Timo Gaiser, Stefan Fröhling, and Titus J Brinker. Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review. Eur. J. Cancer, (172):403--404, Elsevier BV, September 2022. [PUMA: topic_lifescience]

Titus J Brinker, Max Schmitt, Eva I Krieghoff-Henning, Raymond Barnhill, Helmut Beltraminelli, Stephan A Braun, Richard Carr, Maria-Teresa Fernandez-Figueras, Gerardo Ferrara, Sylvie Fraitag, Raffaele Gianotti, Mar Llamas-Velasco, Cornelia S L Müller, Antonio Perasole, Luis Requena, Omar P Sangueza, Carlos Santonja, Hans Starz, Esmeralda Vale, Wolfgang Weyers, Achim Hekler, Jakob N Kather, Stefan Fröhling, Dieter Krahl, Tim Holland-Letz, Jochen S Utikal, Andrea Saggini, and Heinz Kutzner. Diagnostic performance of artificial intelligence for histologic melanoma recognition compared to 18 international expert pathologists. J. Am. Acad. Dermatol., (86)3:640--642, Elsevier BV, March 2022. [PUMA: topic_lifescience]

Rüdiger Schmitz, and Jakob Nikolas Kather. Artificial intelligence in Barrett's oesophagus and the need for shared and combined data. United European Gastroenterol. J., (10)6:525--527, Wiley, July 2022. [PUMA: topic_lifescience]

Beatriz Martinez-Vega, Mariia Tkachenko, Marianne Matkabi, Samuel Ortega, Himar Fabelo, Francisco Balea-Fernandez, Marco La Salvia, Emanuele Torti, Francesco Leporati, Gustavo M. Callico, and Claire Chalopin. Evaluation of Preprocessing Methods on Independent Medical Hyperspectral Databases to Improve Analysis. Sensors, (22)22:8917, 2022. [PUMA: topic_lifescience]

Shannon T Smith, Laura Shub, and Jens Meiler. PlaceWaters: Real-time, explicit interface water sampling during Rosetta ligand docking. PLoS One, (17)5:e0269072, Public Library of Science (PLoS), May 2022. [PUMA: topic_lifescience]

Nina G Bozhanova, Andrew I Flyak, Benjamin P Brown, Stormy E Ruiz, Jordan Salas, Semi Rho, Robin G Bombardi, Luke Myers, Cinque Soto, Justin R Bailey, James E Crowe, Jr, Pamela J Bjorkman, and Jens Meiler. Computational identification of HCV neutralizing antibodies with a common HCDR3 disulfide bond motif in the antibody repertoires of infected individuals. Nat. Commun., (13)1:3178, Springer Science and Business Media LLC, June 2022. [PUMA: topic_lifescience]

Clara T Schoeder, Pavlo Gilchuk, Amandeep K Sangha, Kaitlyn V Ledwitch, Delphine C Malherbe, Xuan Zhang, Elad Binshtein, Lauren E Williamson, Cristina E Martina, Jinhui Dong, Erica Armstrong, Rachel Sutton, Rachel Nargi, Jessica Rodriguez, Natalia Kuzmina, Brooke Fiala, Neil P King, Alexander Bukreyev, James E Crowe, Jr, and Jens Meiler. Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region. PLoS Pathog., (18)5:e1010518, Public Library of Science (PLoS), May 2022. [PUMA: topic_lifescience]

Saksham Phul, Georg Kuenze, Carlos G Vanoye, Charles R Sanders, Alfred L George, Jr, and Jens Meiler. Predicting the functional impact of KCNQ1 variants with artificial neural networks. PLoS Comput. Biol., (18)4:e1010038, Public Library of Science (PLoS), April 2022. [PUMA: topic_lifescience]

Georg Walther, Christian Martin, Amelie Haase, Ulf Nestler, and Stefan Schob. Machine learning for rupture risk prediction of intracranial aneurysms: Challenging the PHASES score in geographically constrained areas. Symmetry, Special Issue: Neuroscience and Molecular Sciences, (14)5:943, MDPI AG, May 2022. [PUMA: topic_lifescience]

Jan Heinrich Reimer, Johannes Huck, and Alexander Bondarenko. Grimjack at Touché 2022: Axiomatic Re-ranking and Query Reformulation. In Guglielmo Faggioli, Nicola Ferro, Allan Hanbury, and Martin Potthast (Eds.), Working Notes Papers of the CLEF 2022 Evaluation Labs, (3180)September 2022. [PUMA: topic_language topic_lifescience] URL

Yamen Ajjour, Pavel Braslavski, Alexander Bondarenko, and Benno Stein. Identifying argumentative questions in web search logs. Proceedings of the 45th International ACM SIGIR Conference on Research and Development in Information Retrieval, ACM, New York, NY, USA, July 2022. [PUMA: topic_language]

Alexander Bondarenko, Yamen Ajjour, Valentin Dittmar, Niklas Homann, Pavel Braslavski, and Matthias Hagen. Towards understanding and answering comparative questions. Proceedings of the Fifteenth ACM International Conference on Web Search and Data Mining, ACM, New York, NY, USA, February 2022. [PUMA: topic_language]

Alexander Bondarenko, Magdalena Wolska, Stefan Heindorf, Lukas Blübaum, Axel-Cyrille Ngonga Ngomo, Benno Stein, Pavel Braslavski, Matthias Hagen, and Martin Potthast. CausalQA: A Benchmark for Causal Question Answering. Proceedings of the 29th International Conference on Computational Linguistics, 3296--3308, International Committee on Computational Linguistics, Gyeongju, Republic of Korea, October 2022. [PUMA: topic_language] URL

Maik Fröbe, Christopher Akiki, Martin Potthast, and Matthias Hagen. Noise-reduction for automatically transferred relevance judgments. Lecture Notes in Computer Science, 48--61, Springer International Publishing, Cham, 2022. [PUMA: topic_language]

Maik Fröbe, Sebastian Günther, Maximilian Probst, Martin Potthast, and Matthias Hagen. Webis-MS-MARCO-Anchor-Texts-22. Zenodo, 2022. [PUMA: topic_language]