Publications

Shahbaz Syed, Timon Ziegenbein, Philipp Heinisch, Henning Wachsmuth, and Martin Potthast. Frame-oriented Summarization of Argumentative Discussions. Proceedings of the 24th Meeting of the Special Interest Group on Discourse and Dialogue, 114–129, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Maik Fröbe, Harrisen Scells, Theresa Elstner, Christopher Akiki, Lukas Gienapp, Jan Heinrich Reimer, Sean MacAvaney, Benno Stein, Matthias Hagen, and Martin Potthast. Resources for Combining Teaching and Research in Information Retrieval Coursework. Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1115–1125, ACM, July 2024. [PUMA: imported] URL

Negin Malekian, Srividhya Sainath, Ali Al-Fatlawi, and Michael Schroeder. Word-based GWAS harnesses the rich potential of genomic data for E. coli quinolone resistance. Frontiers in Microbiology, (14)Frontiers Media SA, December 2023. [PUMA: imported] URL

Philipp Schake, Klevia Dishnica, Florian Kaiser, Christoph Leberecht, V. Joachim Haupt, and Michael Schroeder. An interaction-based drug discovery screen explains known SARS-CoV-2 inhibitors and predicts new compound scaffolds. Scientific Reports, (13)1Springer Science and Business Media LLC, June 2023. [PUMA: imported] URL

Abibe Useini, Inken Kaja Schwerin, Georg Künze, and Norbert Sträter. Structural Studies on the Binding Mode of Bisphenols to PPARγ. Biomolecules, (14)6:640, MDPI AG, May 2024. [PUMA: imported] URL

Melissa F. Adasme, Sarah Naomi Bolz, Ali Al-Fatlawi, and Michael Schroeder. Decomposing compounds enables reconstruction of interaction fingerprints for structure-based drug screening. Journal of Cheminformatics, (14)1Springer Science and Business Media LLC, March 2022. [PUMA: imported] URL

Christine Bauer, Ben Carterette, Nicola Ferro, Norbert Fuhr, Joeran Beel, Timo Breuer, Charles LA Clarke, Anita Crescenzi, Gianluca Demartini, Giorgio Maria Di Nunzio, and others. Report on the Dagstuhl Seminar on Frontiers of Information Access Experimentation for Research and Education. ACM SIGIR Forum, (57)1:1--28, 2023. [PUMA: imported]

Eva Zangerle, Maximilian Mayerl, Martin Potthast, and Benno Stein. Overview of the Multi-Author Writing Style Analysis Task at PAN 2023.. CLEF (Working Notes), 2513--2522, 2023. [PUMA: imported]

Matti Wiegmann, Magdalena Wolska, Martin Potthast, and Benno Stein. Overview of the Trigger Detection Task at PAN 2023.. CLEF (Working Notes), 2523--2536, 2023. [PUMA: imported]

Kortney Melancon, Palina Pliushcheuskaya, Jens Meiler, and Georg Künze. Targeting ion channels with ultra-large library screening for hit discovery. Frontiers in Molecular Neuroscience, (16)Frontiers Media SA, January 2024. [PUMA: imported] URL

Shahbaz Syed, Khalid Al Khatib, and Martin Potthast. TL;DR Progress: Multi-faceted Literature Exploration in Text Summarization. In Nikolaos Aletras, and Orphee De Clercq (Eds.), Proceedings of the 18th Conference of the European Chapter of the Association for Computational Linguistics: System Demonstrations, 195--206, Association for Computational Linguistics, St. Julians, Malta, March 2024. [PUMA: imported] URL

Aleksandra Piktus, Odunayo Ogundepo, Christopher Akiki, Akintunde Oladipo, Xinyu Zhang, Hailey Schoelkopf, Stella Biderman, Martin Potthast, and Jimmy Lin. GAIA Search: Hugging Face and Pyserini Interoperability for NLP Training Data Exploration. Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 3: System Demonstrations), 588–598, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Niklas Deckers, and Martin Potthast. Towards the Reproducible Evaluation of Generative Information Retrieval Systems. Workshop on the impact of generative AI on search and search engine research, September 2023. [PUMA: imported]

Maik Fröbe, Jan Heinrich Reimer, Sean MacAvaney, Niklas Deckers, Simon Reich, Janek Bevendorff, Benno Stein, Matthias Hagen, and Martin Potthast. The Information Retrieval Experiment Platform (Extended Abstract). Proceedings of the Thirty-ThirdInternational Joint Conference on Artificial Intelligence, 8405–8410, International Joint Conferences on Artificial Intelligence Organization, August 2024. [PUMA: imported] URL

Nandan Thakur, Luiz Bonifacio, Maik Fröbe, Alexander Bondarenko, Ehsan Kamalloo, Martin Potthast, Matthias Hagen, and Jimmy Lin. Systematic Evaluation of Neural Retrieval Models on the Touché 2020 Argument Retrieval Subset of BEIR. Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1420–1430, ACM, July 2024. [PUMA: imported] URL

Johannes Schimunek, Philipp Seidl, Katarina Elez, Tim Hempel, Tuan Le, Frank Noé, Simon Olsson, Lluís Raich, Robin Winter, Hatice Gokcan, Filipp Gusev, Evgeny M. Gutkin, Olexandr Isayev, Maria G. Kurnikova, Chamali H. Narangoda, Roman Zubatyuk, Ivan P. Bosko, Konstantin V. Furs, Anna D. Karpenko, Yury V. Kornoushenko, Mikita Shuldau, Artsemi Yushkevich, Mohammed B. Benabderrahmane, Patrick Bousquet‐Melou, Ronan Bureau, Beatrice Charton, Bertrand C. Cirou, Gérard Gil, William J. Allen, Suman Sirimulla, Stanley Watowich, Nick Antonopoulos, Nikolaos Epitropakis, Agamemnon Krasoulis, Vassilis Pitsikalis, Stavros Theodorakis, Igor Kozlovskii, Anton Maliutin, Alexander Medvedev, Petr Popov, Mark Zaretckii, Hamid Eghbal‐Zadeh, Christina Halmich, Sepp Hochreiter, Andreas Mayr, Peter Ruch, Michael Widrich, Francois Berenger, Ashutosh Kumar, Yoshihiro Yamanishi, Kam Y. J. Zhang, Emmanuel Bengio, Yoshua Bengio, Moksh J. Jain, Maksym Korablyov, Cheng‐Hao Liu, Gilles Marcou, Enrico Glaab, Kelly Barnsley, Suhasini M. Iyengar, Mary Jo Ondrechen, V. Joachim Haupt, Florian Kaiser, Michael Schroeder, Luisa Pugliese, Simone Albani, Christina Athanasiou, Andrea Beccari, Paolo Carloni, Giulia D’Arrigo, Eleonora Gianquinto, Jonas Goßen, Anton Hanke, Benjamin P. Joseph, Daria B. Kokh, Sandra Kovachka, Candida Manelfi, Goutam Mukherjee, Abraham Muñiz‐Chicharro, Francesco Musiani, Ariane Nunes‐Alves, Giulia Paiardi, Giulia Rossetti, S. Kashif Sadiq, Francesca Spyrakis, Carmine Talarico, Alexandros Tsengenes, Rebecca C. Wade, Conner Copeland, Jeremiah Gaiser, Daniel R. Olson, Amitava Roy, Vishwesh Venkatraman, Travis J. Wheeler, Haribabu Arthanari, Klara Blaschitz, Marco Cespugli, Vedat Durmaz, Konstantin Fackeldey, Patrick D. Fischer, Christoph Gorgulla, Christian Gruber, Karl Gruber, Michael Hetmann, Jamie E. Kinney, Krishna M. Padmanabha Das, Shreya Pandita, Amit Singh, Georg Steinkellner, Guilhem Tesseyre, Gerhard Wagner, Zi‐Fu Wang, Ryan J. Yust, Dmitry S. Druzhilovskiy, Dmitry A. Filimonov, Pavel V. Pogodin, Vladimir Poroikov, Anastassia V. Rudik, Leonid A. Stolbov, Alexander V. Veselovsky, Maria De Rosa, Giada De Simone, Maria R. Gulotta, Jessica Lombino, Nedra Mekni, Ugo Perricone, Arturo Casini, Amanda Embree, D. Benjamin Gordon, David Lei, Katelin Pratt, Christopher A. Voigt, Kuang‐Yu Chen, Yves Jacob, Tim Krischuns, Pierre Lafaye, Agnès Zettor, M. Luis Rodríguez, Kris M. White, Daren Fearon, Frank Von Delft, Martin A. Walsh, Dragos Horvath, Charles L. Brooks, Babak Falsafi, Bryan Ford, Adolfo García‐Sastre, Sang Yup Lee, Nadia Naffakh, Alexandre Varnek, Günter Klambauer, and Thomas M. Hermans. A community effort in SARS‐CoV‐2 drug discovery. Molecular Informatics, (43)1Wiley, November 2023. [PUMA: imported] URL

Lukas Gienapp, Wolfgang Kircheis, Bjarne Sievers, Benno Stein, and Martin Potthast. A large dataset of scientific text reuse in Open-Access publications. Scientific Data, (10)1:58, Nature Publishing Group UK London, 2023. [PUMA: imported]

Michael Granitzer, Stefan Voigt, Noor Afshan Fathima, Martin Golasowski, Christian Guetl, Tobias Hecking, Gijs Hendriksen, Djoerd Hiemstra, Jan Martinovic, Jelena Mitrović, and others. Impact and development of an Open Web Index for open web search. Journal of the Association for Information Science and Technology, (75)5:512--520, Wiley Online Library, 2024. [PUMA: imported]

Timon Ziegenbein, Shahbaz Syed, Felix Lange, Martin Potthast, and Henning Wachsmuth. Modeling Appropriate Language in Argumentation. Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 4344–4363, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Vahid Sadiri Javadi, Martin Potthast, and Lucie Flek. OpinionConv: Conversational Product Search with Grounded Opinions. Proceedings of the 24th Meeting of the Special Interest Group on Discourse and Dialogue, 66–76, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Hermann Diebel-Fischer, and Lutz Hellmig. Ethische Fragen und informatische Modelle – eine symbiotische Beziehung in der informatischen Bildung. 755--760, Gesellschaft für Informatik,Bonn, 2022. [PUMA: imported]

Hermann Diebel-Fischer. Künstliche Intelligenz und Ethik: Von der Unberechenbarkeit moralischer Erwägungen. Evangelische Aspekte, (34)1:25--27, Evangelische Akademikerschaft in Deutschland e. V., 2024. [PUMA: imported]

Hermann Diebel-Fischer, Lutz Hellmig, and Maya Tischler. Technik und Verantwortung im Zeitalter der Digitalisierung. Universität Rostock, 2022. [PUMA: imported]

Maik Fröbe, Theresa Elstner, Harrisen Scells, and Martin Potthast. Prototyping Open Web Search Applications with TIRA: A Case Study in Research-oriented Teaching. In Andreas Wagner, Christian Guetl, Michael Granitzer, and Stefan Voigt (Eds.), 5th International Symposium on Open Search Technology (OSSYM 2023), International Open Search Symposium, October 2023. [PUMA: imported] URL

Maik Fröbe, Gijs Hendriksen, Arjen P de Vries, and Martin Potthast. Open Web Search at LongEval 2023: Reciprocal Rank Fusion on Automatically Generated Query Variants. Sl: CEUR, 2023. [PUMA: imported]

Tim Gollub, Jason Brockmeyer, Benno Stein, and Martin Potthast. Dynamic Exploratory Search for the Information Retrieval Anthology. European Conference on Information Retrieval, 242--247, 2023. [PUMA: imported]

Palina Pliushcheuskaya, Sandeep Kesh, Emma Kaufmann, Sophie Wucherpfennig, Frank Schwede, Georg Künze, and Vasilica Nache. Similar Binding Modes of cGMP Analogues Limit Selectivity in Modulating Retinal CNG Channels via the Cyclic Nucleotide-Binding Domain. ACS Chemical Neuroscience, (15)8:1652–1668, American Chemical Society (ACS), April 2024. [PUMA: imported] URL

Hermann Diebel-Fischer, Nicole Kunkel, and Julian Zeyher-Quattlender. Mensch und Maschine im Zeitalter" Künstlicher Intelligenz": theologisch-ethischer Herausforderungen. (45)LIT Verlag Münster, 2023. [PUMA: imported]

Rodolfo A. Maniero, Cristiana Picco, Anja Hartmann, Felipe Engelberger, Antonella Gradogna, Joachim Scholz-Starke, Michael Melzer, Georg Künze, Armando Carpaneto, Nicolaus von Wirén, and Ricardo F. H. Giehl. Ferric reduction by a CYBDOM protein counteracts increased iron availability in root meristems induced by phosphorus deficiency. Nature Communications, (15)1Springer Science and Business Media LLC, January 2024. [PUMA: imported] URL

Johannes Kiesel, Cagrı Cöltekin, Maximilian Heinrich, Maik Fröbe, Milad Alshomary, Bertrand De Longueville, Tomaz Erjavec, Nicolas Handke, Matyás Kopp, Nikola Ljubesić, and others. Overview of Touché 2024: Argumentation Systems. 2024. [PUMA: imported]

Sarah Naomi Bolz, and Michael Schroeder. Promiscuity in drug discovery on the verge of the structural revolution: recent advances and future chances. Expert Opinion on Drug Discovery, (18)9:973–985, Informa UK Limited, July 2023. [PUMA: imported] URL

Ines Zelch, Matthias Hagen, and Martin Potthast. Advertising in Generative Information Retrieval. Workshop on the Impact of Generative AI on Search and Search Engine Research, September 2023. [PUMA: imported]

Niklas Deckers, Maik Fröbe, Johannes Kiesel, Gianluca Pandolfo, Christopher Schröder, Benno Stein, and Martin Potthast. The infinite index: Information retrieval on generative text-to-image models. Proceedings of the 2023 conference on human information interaction and retrieval, 172--186, 2023. [PUMA: imported]

Ali Al-Fatlawi, Nazia Afrin, Cigdem Ozen, Negin Malekian, and Michael Schroeder. NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction. Frontiers in Bioinformatics, (2)Frontiers Media SA, March 2022. [PUMA: imported] URL

Matti Wiegmann, Magdalena Wolska, Benno Stein, and Martin Potthast. Introducing Computational Research on Trigger Warnings. In Katrin Weller, Pascal Siegers, Indira Sen, and Christina Dahn (Eds.), Conference on Harmful Online Communication (CHOC 2023), Gesis, Cologne, Germany, November 2023. [PUMA: imported]

Shahbaz Syed, Dominik Schwabe, Khalid Khatib, and Martin Potthast. Indicative Summarization of Long Discussions. Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, 2752–2788, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Maik Fröbe, Jan Heinrich Reimer, Sean MacAvaney, Niklas Deckers, Janek Bevendorff, Benno Stein, Matthias Hagen, and Martin Potthast. The Information Retrieval Experiment Platform (Extended Abstract). Lernen. Wissen. Daten. Analysen. -- LWDA 2023, 179--191, CEUR-WS.org, October 2023. [PUMA: imported] URL

Abinew Ali Ayele, Nikolay Babakov, Janek Bevendorff, Xavier Bonet Casals, Berta Chulvi, Daryna Dementieva, Ashaf Elnagar, Dayne Freitag, Maik Fröbe, Damir Korencić, and others. Overview of PAN 2024: Multi-author Writing Style Analysis, Multilingual Text Detoxification, Oppositional Thinking Analysis, and Generative AI Authorship Verification Condensed Lab Overview. International Conference of the Cross-Language Evaluation Forum for European Languages, 231--259, 2024. [PUMA: imported]

Efstathios Stamatatos, Krzysztof Kredens, Piotr Pezik, Annina Heini, Janek Bevendorff, Benno Stein, and Martin Potthast. Overview of the Authorship Verification Task at PAN 2023. In Mohammad Aliannejadi, Guglielmo Faggioli, Nicola Ferro, and Michalis Vlachos (Eds.), Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), (3497):2476--2491, September 2023. [PUMA: imported] URL

Benno Stein, Arno Simons, Martin Potthast, Saskia Hagen, and Kai Wörner. Protokoll 24. ChatGPT und andere »Quatschmaschinen«, 170–191, transcript Verlag, October 2023. [PUMA: imported] URL

Lukas Gienapp, Harrisen Scells, Niklas Deckers, Janek Bevendorff, Shuai Wang, Johannes Kiesel, Shahbaz Syed, Maik Fröbe, Guido Zuccon, Benno Stein, Matthias Hagen, and Martin Potthast. Evaluating Generative Ad Hoc Information Retrieval. Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval, 1916–1929, ACM, July 2024. [PUMA: imported] URL

Magdalena Wolska, Matti Wiegmann, Christopher Schröder, Ole Borchardt, Benno Stein, and Martin Potthast. Trigger Warnings: Bootstrapping a Violence Detector for Fan Fiction. Findings of the Association for Computational Linguistics: EMNLP 2023, 569–576, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Shahbaz Syed, Ahmad Hakimi, Khalid Al-Khatib, and Martin Potthast. Citance-Contextualized Summarization of Scientific Papers. In Houda Bouamor, Juan Pino, and Kalika Bali (Eds.), Findings of the Association for Computational Linguistics: EMNLP 2023, 8551--8568, Association for Computational Linguistics, Singapore, December 2023. [PUMA: imported] URL

Khalid Al Khatib, Michael Voelske, Anh Le, Shahbaz Syed, Martin Potthast, and Benno Stein. A New Dataset for Causality Identification in Argumentative Texts. Proceedings of the 24th Meeting of the Special Interest Group on Discourse and Dialogue, 349–354, Association for Computational Linguistics, 2023. [PUMA: imported] URL

Negin Malekian, Amay A. Agrawal, Thomas U. Berendonk, Ali Al-Fatlawi, and Michael Schroeder. A genome-wide scan of wastewater E. coli for genes under positive selection: focusing on mechanisms of antibiotic resistance. Scientific Reports, (12)1Springer Science and Business Media LLC, May 2022. [PUMA: imported] URL

Aarohi Srivastava, Abhinav Rastogi, Abhishek Rao, Abu Awal Md Shoeb, Abubakar Abid, Adam Fisch, Adam R. Brown, Adam Santoro, Aditya Gupta, Adrià Garriga-Alonso, Agnieszka Kluska, Aitor Lewkowycz, Akshat Agarwal, Alethea Power, Alex Ray, Alex Warstadt, Alexander W. Kocurek, Ali Safaya, Ali Tazarv, Alice Xiang, Alicia Parrish, Allen Nie, Aman Hussain, Amanda Askell, Amanda Dsouza, Ambrose Slone, Ameet Rahane, Anantharaman S. Iyer, Anders Andreassen, Andrea Madotto, Andrea Santilli, Andreas Stuhlmüller, Andrew Dai, Andrew La, Andrew Lampinen, Andy Zou, Angela Jiang, Angelica Chen, Anh Vuong, Animesh Gupta, Anna Gottardi, Antonio Norelli, Anu Venkatesh, Arash Gholamidavoodi, Arfa Tabassum, Arul Menezes, Arun Kirubarajan, Asher Mullokandov, Ashish Sabharwal, Austin Herrick, Avia Efrat, Aykut Erdem, Ayla Karakaş, B. Ryan Roberts, Bao Sheng Loe, Barret Zoph, Bartłomiej Bojanowski, Batuhan Özyurt, Behnam Hedayatnia, Behnam Neyshabur, Benjamin Inden, Benno Stein, Berk Ekmekci, Bill Yuchen Lin, Blake Howald, Bryan Orinion, Cameron Diao, Cameron Dour, Catherine Stinson, Cedrick Argueta, César Ferri Ramírez, Chandan Singh, Charles Rathkopf, Chenlin Meng, Chitta Baral, Chiyu Wu, Chris Callison-Burch, Chris Waites, Christian Voigt, Christopher D. Manning, Christopher Potts, Cindy Ramirez, Clara E. Rivera, Clemencia Siro, Colin Raffel, Courtney Ashcraft, Cristina Garbacea, Damien Sileo, Dan Garrette, Dan Hendrycks, Dan Kilman, Dan Roth, Daniel Freeman, Daniel Khashabi, Daniel Levy, Daniel Moseguí González, Danielle Perszyk, Danny Hernandez, Danqi Chen, Daphne Ippolito, Dar Gilboa, David Dohan, David Drakard, David Jurgens, Debajyoti Datta, Deep Ganguli, Denis Emelin, Denis Kleyko, Deniz Yuret, Derek Chen, Derek Tam, Dieuwke Hupkes, Diganta Misra, Dilyar Buzan, Dimitri Coelho Mollo, Diyi Yang, Dong-Ho Lee, Dylan Schrader, Ekaterina Shutova, Ekin Dogus Cubuk, Elad Segal, Eleanor Hagerman, Elizabeth Barnes, Elizabeth Donoway, Ellie Pavlick, Emanuele Rodola, Emma Lam, Eric Chu, Eric Tang, Erkut Erdem, Ernie Chang, Ethan A. Chi, Ethan Dyer, Ethan Jerzak, Ethan Kim, Eunice Engefu Manyasi, Evgenii Zheltonozhskii, Fanyue Xia, Fatemeh Siar, Fernando Martínez-Plumed, Francesca Happé, Francois Chollet, Frieda Rong, Gaurav Mishra, Genta Indra Winata, Gerard de Melo, Germán Kruszewski, Giambattista Parascandolo, Giorgio Mariani, Gloria Wang, Gonzalo Jaimovitch-López, Gregor Betz, Guy Gur-Ari, Hana Galijasevic, Hannah Kim, Hannah Rashkin, Hannaneh Hajishirzi, Harsh Mehta, Hayden Bogar, Henry Shevlin, Hinrich Schütze, Hiromu Yakura, Hongming Zhang, Hugh Mee Wong, Ian Ng, Isaac Noble, Jaap Jumelet, Jack Geissinger, Jackson Kernion, Jacob Hilton, Jaehoon Lee, Jaime Fernández Fisac, James B. Simon, James Koppel, James Zheng, James Zou, Jan Kocoń, Jana Thompson, Janelle Wingfield, Jared Kaplan, Jarema Radom, Jascha Sohl-Dickstein, Jason Phang, Jason Wei, Jason Yosinski, Jekaterina Novikova, Jelle Bosscher, Jennifer Marsh, Jeremy Kim, Jeroen Taal, Jesse Engel, Jesujoba Alabi, Jiacheng Xu, Jiaming Song, Jillian Tang, Joan Waweru, John Burden, John Miller, John U. Balis, Jonathan Batchelder, Jonathan Berant, Jörg Frohberg, Jos Rozen, Jose Hernandez-Orallo, Joseph Boudeman, Joseph Guerr, Joseph Jones, Joshua B. Tenenbaum, Joshua S. Rule, Joyce Chua, Kamil Kanclerz, Karen Livescu, Karl Krauth, Karthik Gopalakrishnan, Katerina Ignatyeva, Katja Markert, Kaustubh D. Dhole, Kevin Gimpel, Kevin Omondi, Kory Mathewson, Kristen Chiafullo, Ksenia Shkaruta, Kumar Shridhar, Kyle McDonell, Kyle Richardson, Laria Reynolds, Leo Gao, Li Zhang, Liam Dugan, Lianhui Qin, Lidia Contreras-Ochando, Louis-Philippe Morency, Luca Moschella, Lucas Lam, Lucy Noble, Ludwig Schmidt, Luheng He, Luis Oliveros Colón, Luke Metz, Lütfi Kerem Şenel, Maarten Bosma, Maarten Sap, Maartje ter Hoeve, Maheen Farooqi, Manaal Faruqui, Mantas Mazeika, Marco Baturan, Marco Marelli, Marco Maru, Maria Jose Ramírez Quintana, Marie Tolkiehn, Mario Giulianelli, Martha Lewis, Martin Potthast, Matthew L. Leavitt, Matthias Hagen, Mátyás Schubert, Medina Orduna Baitemirova, Melody Arnaud, Melvin McElrath, Michael A. Yee, Michael Cohen, Michael Gu, Michael Ivanitskiy, Michael Starritt, Michael Strube, Michał Swędrowski, Michele Bevilacqua, Michihiro Yasunaga, Mihir Kale, Mike Cain, Mimee Xu, Mirac Suzgun, Mitch Walker, Mo Tiwari, Mohit Bansal, Moin Aminnaseri, Mor Geva, Mozhdeh Gheini, Mukund Varma T, Nanyun Peng, Nathan A. Chi, Nayeon Lee, Neta Gur-Ari Krakover, Nicholas Cameron, Nicholas Roberts, Nick Doiron, Nicole Martinez, Nikita Nangia, Niklas Deckers, Niklas Muennighoff, Nitish Shirish Keskar, Niveditha S. Iyer, Noah Constant, Noah Fiedel, Nuan Wen, Oliver Zhang, Omar Agha, Omar Elbaghdadi, Omer Levy, Owain Evans, Pablo Antonio Moreno Casares, Parth Doshi, Pascale Fung, Paul Pu Liang, Paul Vicol, Pegah Alipoormolabashi, Peiyuan Liao, Percy Liang, Peter Chang, Peter Eckersley, Phu Mon Htut, Pinyu Hwang, Piotr Miłkowski, Piyush Patil, Pouya Pezeshkpour, Priti Oli, Qiaozhu Mei, Qing Lyu, Qinlang Chen, Rabin Banjade, Rachel Etta Rudolph, Raefer Gabriel, Rahel Habacker, Ramon Risco, Raphaël Millière, Rhythm Garg, Richard Barnes, Rif A. Saurous, Riku Arakawa, Robbe Raymaekers, Robert Frank, Rohan Sikand, Roman Novak, Roman Sitelew, Ronan LeBras, Rosanne Liu, Rowan Jacobs, Rui Zhang, Ruslan Salakhutdinov, Ryan Chi, Ryan Lee, Ryan Stovall, Ryan Teehan, Rylan Yang, Sahib Singh, Saif M. Mohammad, Sajant Anand, Sam Dillavou, Sam Shleifer, Sam Wiseman, Samuel Gruetter, Samuel R. Bowman, Samuel S. Schoenholz, Sanghyun Han, Sanjeev Kwatra, Sarah A. Rous, Sarik Ghazarian, Sayan Ghosh, Sean Casey, Sebastian Bischoff, Sebastian Gehrmann, Sebastian Schuster, Sepideh Sadeghi, Shadi Hamdan, Sharon Zhou, Shashank Srivastava, Sherry Shi, Shikhar Singh, Shima Asaadi, Shixiang Shane Gu, Shubh Pachchigar, Shubham Toshniwal, Shyam Upadhyay, Shyamolima, Debnath, Siamak Shakeri, Simon Thormeyer, Simone Melzi, Siva Reddy, Sneha Priscilla Makini, Soo-Hwan Lee, Spencer Torene, Sriharsha Hatwar, Stanislas Dehaene, Stefan Divic, Stefano Ermon, Stella Biderman, Stephanie Lin, Stephen Prasad, Steven T. Piantadosi, Stuart M. Shieber, Summer Misherghi, Svetlana Kiritchenko, Swaroop Mishra, Tal Linzen, Tal Schuster, Tao Li, Tao Yu, Tariq Ali, Tatsu Hashimoto, Te-Lin Wu, Théo Desbordes, Theodore Rothschild, Thomas Phan, Tianle Wang, Tiberius Nkinyili, Timo Schick, Timofei Kornev, Titus Tunduny, Tobias Gerstenberg, Trenton Chang, Trishala Neeraj, Tushar Khot, Tyler Shultz, Uri Shaham, Vedant Misra, Vera Demberg, Victoria Nyamai, Vikas Raunak, Vinay Ramasesh, Vinay Uday Prabhu, Vishakh Padmakumar, Vivek Srikumar, William Fedus, William Saunders, William Zhang, Wout Vossen, Xiang Ren, Xiaoyu Tong, Xinran Zhao, Xinyi Wu, Xudong Shen, Yadollah Yaghoobzadeh, Yair Lakretz, Yangqiu Song, Yasaman Bahri, Yejin Choi, Yichi Yang, Yiding Hao, Yifu Chen, Yonatan Belinkov, Yu Hou, Yufang Hou, Yuntao Bai, Zachary Seid, Zhuoye Zhao, Zijian Wang, Zijie J. Wang, Zirui Wang, and Ziyi Wu. Beyond the Imitation Game: Quantifying and extrapolating the capabilities of language models. 2023. [PUMA: imported] URL

Ines Zelch, Matthias Hagen, and Martin Potthast. Commercialized Generative AI: A Critical Study of the Feasibility and Ethics of Generating Native Advertising Using Large Language Models in Conversational Web Search. 2023. [PUMA: imported] URL

Christopher Schröder, Lydia Müller, Andreas Niekler, and Martin Potthast. Small-Text: Active Learning for Text Classification in Python. In Danilo Croce, and Luca Soldaini (Eds.), Proceedings of the 17th Conference of the European Chapter of the Association for Computational Linguistics: System Demonstrations, 84--95, Association for Computational Linguistics, Dubrovnik, Croatia, May 2023. [PUMA: imported] URL

Sheikh Mastura Farzana, Maik Fröbe, Michael Granitzer, Gijs Hendriksen, Djoerd Hiemstra, Martin Potthast, and Saber Zerhoudi. The First International Workshop on Open Web Search (WOWS). European Conference on Information Retrieval, 426--431, 2024. [PUMA: imported]

Shuai Wang, Harrisen Scells, Martin Potthast, Bevan Koopman, and Guido Zuccon. Generating Natural Language Queries for More Effective Systematic Review Screening Prioritisation. 2023. [PUMA: imported] URL

Carina Geldhauser, and Hermann Diebel-Fischer. Is diverse and inclusive AI trapped in the gap between reality and algorithmizability?. Northern Lights Deep Learning Conference, 75--80, 2024. [PUMA: imported]

Birte Platow. Verdrängung des Menschen?. Zuversichtsargumente, 245--264, Brill Schöningh, 2022. [PUMA: imported]

Loubna Ben Allal, Raymond Li, Denis Kocetkov, Chenghao Mou, Christopher Akiki, Carlos Munoz Ferrandis, Niklas Muennighoff, Mayank Mishra, Alex Gu, Manan Dey, Logesh Kumar Umapathi, Carolyn Jane Anderson, Yangtian Zi, Joel Lamy Poirier, Hailey Schoelkopf, Sergey Troshin, Dmitry Abulkhanov, Manuel Romero, Michael Lappert, Francesco De Toni, Bernardo García del Río, Qian Liu, Shamik Bose, Urvashi Bhattacharyya, Terry Yue Zhuo, Ian Yu, Paulo Villegas, Marco Zocca, Sourab Mangrulkar, David Lansky, Huu Nguyen, Danish Contractor, Luis Villa, Jia Li, Dzmitry Bahdanau, Yacine Jernite, Sean Hughes, Daniel Fried, Arjun Guha, Harm de Vries, and Leandro von Werra. SantaCoder: don't reach for the stars!. 2023. [PUMA: imported] URL

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Error-Tolerant Reasoning in the Description Logic ℰℒ Based On Optimal Repairs. Proceedings of the 6th International Joint Conference on Rules and Reasoning, RuleML+RR 2022, Virtual, September 26--28, 2022, (13752):227--243, Springer, 2022. [PUMA: area_methods topic_knowledge]

Franz Baader, and Francesco Kriegel. Pushing Optimal ABox Repair from ℰℒ Towards More Expressive Horn-DLs (Extended Version). 22-02Dresden, Germany, 2022. [PUMA: area_methods topic_lifescience]

Franz Baader, and Francesco Kriegel. Pushing Optimal ABox Repair from ℰℒ Towards More Expressive Horn-DLs. Proceedings of the 19th International Conference on Principles of Knowledge Representation and Reasoning, KR 2022, Haifa, Israel, July 31 -- August 5, 2022, 22--32, 2022. [PUMA: area_methods topic_knowledge]

Franz Baader, Patrick Koopmann, Francesco Kriegel, and Adrian Nuradiansyah. Optimal ABox Repair w.r.t. Static ℰℒ TBoxes: from Quantified ABoxes back to ABoxes (Extended Abstract). Proceedings of the 35th International Workshop on Description Logics (DL 2022), Haifa, Israel, August 7--10, 2022, (3263)CEUR-WS.org, 2022. [PUMA: area_methods topic_knowledge]

Franz Baader, Patrick Koopmann, Francesco Kriegel, and Adrian Nuradiansyah. Optimal ABox Repair w.r.t.\ Static ℰℒ TBoxes: from Quantified ABoxes back to ABoxes (Extended Version). 22-01Dresden, Germany, 2022. [PUMA: area_methods topic_knowledge]

Franz Baader, Patrick Koopmann, Francesco Kriegel, and Adrian Nuradiansyah. Optimal ABox Repair w.r.t.\ Static ℰℒ TBoxes: from Quantified ABoxes back to ABoxes. Proceedings of the 19th Extended Semantic Web Conference, ESWC 2022, Hersonissos, Greece, May 29 -- June 2, 2022, (13261):130--146, Springer, 2022. [PUMA: area_methods topic_knowledge]

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Treating Role Assertions as First-class Citizens in Repair and Error-tolerant Reasoning. Proceedings of the 38th ACM/SIGAPP Symposium on Applied Computing (SAC '23), March 27--31, 2023, Tallinn, Estonia, 974--982, Association for Computing Machinery, 2023. [PUMA: area_methods topic_knowledge]

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Error-Tolerant Reasoning in ℰℒ w.r.t.\ Optimal ABox Repairs (Extended Abstract). Proceedings of the 36th International Workshop on Description Logics (DL 2023), Rhodes, Greece, September 2--4, 2023, (3515)CEUR-WS.org, 2023. [PUMA: area_methods topic_knowledge]

Franz Baader, Patrick Koopmann, and Francesco Kriegel. Optimal Repairs in the Description Logic ℰℒ Revisited (Extended Version). 23-03Dresden, Germany, 2023. [PUMA: area_methods topic_knowledge]

Franz Baader, Patrick Koopmann, and Francesco Kriegel. Optimal Repairs in the Description Logic ℰℒ Revisited. Proceedings of the 18th European Conference on Logics in Artificial Intelligence (JELIA 2023), September 20--22, 2023, Dresden, Germany, (14281):11--34, Springer, 2023. [PUMA: area_methods topic_knowledge]

Francesco Kriegel. Efficient Axiomatization of OWL 2 EL Ontologies from Data by means of Formal Concept Analysis (Extended Abstract). Proceedings of the 37th International Workshop on Description Logics (DL 2024), Bergen, Norway, June 18--21, 2024, (3739)CEUR-WS.org, 2024. [PUMA: area_methods topic_knowledge]

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Inconsistency- and Error-Tolerant Reasoning w.r.t.\ Optimal Repairs of ℰℒ⊥ Ontologies (Extended Version). 24-02Dresden, Germany, 2024. [PUMA: area_methods topic_knowledge]

Franz Baader, Francesco Kriegel, and Adrian Nuradiansyah. Inconsistency- and Error-Tolerant Reasoning w.r.t.\ Optimal Repairs of ℰℒ⊥ Ontologies. Proceedings of the 13th International Symposium on Foundations of Information and Knowledge Systems (FoIKS 2024), April 8--11, 2024, Sheffield, United Kingdom, (14589):3--22, Springer, 2024. [PUMA: area_methods topic_knowledge]

Moritz Ertelt, Jens Meiler, and Clara T Schoeder. Combining Rosetta Sequence Design with Protein Language Model Predictions Using Evolutionary Scale Modeling (ESM) as Restraint. ACS Synthetic Biology, (13)4:1085--1092, ACS Publications, 2024. [PUMA: ESM combining design protein rosetta sequence]

Michelle Philipp, Christopher W Moth, Nikola Ristic, Johanna K S Tiemann, Florian Seufert, Aleksandra Panfilova, Jens Meiler, Peter W Hildebrand, Amelie Stein, Daniel Wiegreffe, and others. MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts. Nucleic Acids Research, gkae301, Oxford University Press, 2024. [PUMA: 3d mutation mutationexplorer proteins webserver]

Johanna Moeller, Nina G Bozhanova, Markus Voehler, Jens Meiler, and Clara T Schoeder. Backbone chemical shift and secondary structure assignments for mouse siderocalin. Biomolecular NMR Assignments, (18)1:79--84, Springer, 2024. [PUMA: backbone_chemical_shift mouse_siderocalin secondary_structure_assignment]

Martin Bentler, Romain Hardet, Moritz Ertelt, Daniela Rudolf, Dorota Kaniowska, Andreas Schneider, Florian WR Vondran, Clara T Schoeder, Marion Delphin, Julie Lucifora, and others. Modifying immune responses to adeno-associated virus vectors by capsid engineering. Molecular Therapy-Methods & Clinical Development, (30):576--592, Elsevier, 2023. [PUMA: adeno_virus capsid_engineering immune modifying responses]

D Sala, F Engelberger, HS Mchaourab, and J Meiler. Modeling conformational states of proteins with AlphaFold. Current Opinion in Structural Biology, (81):102645, Elsevier, 2023. [PUMA: alphafold conformational modeling proteins states]

Magdalena Wolska, Christopher Schröder, Ole Borchardt, Benno Stein, and Martin Potthast. Trigger Warnings: Bootstrapping a Violence Detector for FanFiction. September 2022. [PUMA: imported]

Richard Grunzke, Volker Hartmann, T. Jejkal, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Alexander Hoffmann, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Rainer Stotzka, and Wolfgang Nagel. Towards a metadata-driven multi-community research data management service. February 2017. [PUMA: imported]

Hermann Diebel-Fischer, and Christoph Lehmann. Lost in translation? Capturing the world in data considering ethics. June 2022. [PUMA: imported]

Mehdi Ali, Charles Hoyt, Daniel Domingo-Fernández, and Jens Lehmann. Predicting Missing Links Using PyKEEN. August 2019. [PUMA: imported]

Michael Völske, Janek Bevendorff, Johannes Kiesel, Benno Stein, Maik Fröbe, Matthias Hagen, and Martin Potthast. Web Archive Analytics. July 2021. [PUMA: imported]

Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, and Ivo Sbalzarini. Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. June 2022. [PUMA: imported]

Michelle Nixon, Jeffrey Letourneau, Lawrence David, Sayan Mukherjee, and Justin Silverman. A Statistical Analysis of Compositional Surveys. January 2022. [PUMA: imported]

Teven Scao, Angela Fan, Christopher Akiki, Ellie Pavlick, Suzana Ilić, Daniel Hesslow, Roman Castagné, Alexandra Luccioni, François Yvon, Matthias Gallé, Jonathan Tow, Alexander Rush, Stella Biderman, Albert Webson, Pawan Ammanamanchi, Thomas Wang, Benoît Sagot, Niklas Muennighoff, Albert Moral, and Thomas Wolf. BLOOM: A 176B-Parameter Open-Access Multilingual Language Model. November 2022. [PUMA: imported]

Diego Alamo, Jens Meiler, and Hassane Mchaourab. Principles of Alternating Access in LeuT-fold Transporters: Commonalities and Divergences. May 2022. [PUMA: imported]

Carsten Lutz, and Quentin Manière. Adding Circumscription to Decidable Fragments of First-Order Logic: A Complexity Rollercoaster. July 2024. [PUMA: imported]

Afshin Sadeghi, Damien Graux, and Jens Lehmann. MDE: Multi Distance Embeddings for Link Prediction in Knowledge Graphs. May 2019. [PUMA: imported]

David Schaller, Marc Hellmuth, and Peter Stadler. A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set. July 2021. [PUMA: imported]

Philipp Sauer, Janek Bevendorff, Lukas Gienapp, Wolfgang Kircheis, Erik Körner, Benno Stein, and Martin Potthast. SMAuC -- The Scientific Multi-Authorship Corpus. November 2022. [PUMA: imported]

Robin Maack, Gerik Scheuermann, Jose Hernandez, and Christina Gillmann. Uncertainty-aware Visual Analytics - Scope, Oppertunities and Challenges. December 2021. [PUMA: imported]

Martin Fränzl, and Frank Cichos. Hydrodynamic manipulation of nano-objects by optically induced thermo-osmotic flows. Nature communications, (13)1:656, Nature Publishing Group UK London, 2022. [PUMA: Hydrodynamic flows induced manipulation nano-objects optically thermo-osmotic]

Xiangzun Wang, Pin-Chuan Chen, Klaus Kroy, Viktor Holubec, and Frank Cichos. Spontaneous vortex formation by microswimmers with retarded attractions. Nature Communications, (14)1:56, Nature Publishing Group UK London, 2023. [PUMA: Spontaneous attractions formation microswimmers retarded vortex]

Ravi Pradip, and Frank Cichos. Deep reinforcement learning with artificial microswimmers. Emerging Topics in Artificial Intelligence (ETAI) 2022, (12204):104--110, 2022. [PUMA: Deep artificial learning microswimmers reinforcement]

Xiangzun Wang, and Frank Cichos. Harnessing synthetic active particles for physical reservoir computing. Nature Communications, (15)1:774, Nature Publishing Group UK London, 2024. [PUMA: active computing particles physical reservoir synthetic]

Dimitra Kiakou, Adam Adamopoulos, and Nico Scherf. Graph-Based Disease Prediction in Neuroimaging: Investigating the Impact of Feature Selection. Worldwide Congress on “Genetics, Geriatrics and Neurodegenerative Diseases Research", 223--230, 2022. [PUMA: Disease Feature Graph-Based Impact Investigating Neuroimaging Prediction Selection learning]

Elena Williams, Manuel Kienast, Evelyn Medawar, Janis Reinelt, Alberto Merola, Sophie Anne Ines Klopfenstein, Anne Rike Flint, Patrick Heeren, Akira-Sebastian Poncette, Felix Balzer, Nico Scherf, and others. A standardized clinical data harmonization pipeline for scalable ai application deployment (fhir-dhp): Validation and usability study. JMIR Medical Informatics, (11):e43847, JMIR Publications Toronto, Canada, 2023. [PUMA: (fhir-dhp) ai application clinical data deployment harmonization pipeline scalable standardized]

Matthias Zscheyge, Robert Boehm, Andreas Hornig, Johannes Gerritzen, and Maik Gude. Rate dependent non-linear mechanical behaviour of continuous fibre-reinforced thermoplastic composites--Experimental characterisation and viscoelastic-plastic damage modelling. Materials & Design, (193):108827, Elsevier, 2020. [PUMA: Experimental Rate behaviour characterisation composites continuous damage dependent fibre-reinforced mechanical modelling non-linear thermoplastic viscoelastic-plastic]

Lars Muschalski, Joanna Wollmann, Andreas Hornig, and Niels Modler. Steuerung von Compliant-Mechanismen durch Reinforcement Learning. GETRIEBETAGUNG 2022, 121, 2022. [PUMA: Compliant-Mechanismen Learning Reinforcement Steuerung]

Jonas RICHTER, MP Dammann, M Kluge, B Saske, S Arndt, A Hornig, K Paetzold-Byhain, and N Modler. Digitalized Composite Material and Product Development--Strategies And Methods For Multiscale Experimental-Numerical Validation Processes Using PLM And MBSE Approaches. Proceedings of the 21st European Conference on Composite Materials. Nantes Université, 1576--1583, 2024. [PUMA: Composite Development Digitalized Experimental-Numerical MBSE Material Methods Multiscale PLM Processes Product Strategies Validation]

Johannes Gerritzen, Andreas Hornig, Peter Winkler, and Maik Gude. A methodology for direct parameter identification for experimental results using machine learning—Real world application to the highly non-linear deformation behavior of FRP. Computational Materials Science, (244):113274, Elsevier, 2024. [PUMA: FRP Real application behavior deformation direct experimental highly identification learning machine non-linear parameter results using world]

Johannes Gerritzen, Andreas Hornig, Benjamin Gröger, and Maik Gude. A Data Driven Modelling Approach for the Strain Rate Dependent 3D Shear Deformation and Failure of Thermoplastic Fibre Reinforced Composites: Experimental Characterisation and Deriving Modelling Parameters. Journal of Composites Science, (6)10:318, MDPI, 2022. [PUMA: 3D Approach Characterisation Composites Data Deformation Dependent Driven Experimental Failure Fibre Modelling Rate Reinforced Shear Strain Thermoplastic]

Patrick Ebel, Pavlo Bazilinskyy, Angel Hsing-Chi Hwang, Wendy Ju, Hauke Sandhaus, Aravinda Ramakrishnan Srinivasan, Qian Yang, and Philipp Wintersberger. Breaking Barriers: Workshop on Open Data Practices in AutoUI Research. Adjunct Proceedings of the 15th International Conference on Automotive User Interfaces and Interactive Vehicular Applications, 227--230, 2023. [PUMA: AutoUI Data Open Practices Research Workshop]

Patrick Ebel, Kim Julian Gülle, Christoph Lingenfelder, and Andreas Vogelsang. Exploring Millions of User Interactions with ICEBOAT: Big Data Analytics for Automotive User Interfaces. Proceedings of the 15th International Conference on Automotive User Interfaces and Interactive Vehicular Applications, 81--92, 2023. [PUMA: Analytics Automotive Big Data ICEBOAT Interactions Interfaces User]

Franz Baader, and Renata Wassermann. Contractions Based on Optimal Repairs. Proceedings of the TwentyFirst International Conference on Principles of Knowledge Representation and Reasoning, 94–105, International Joint Conferences on Artificial Intelligence Organization, November 2024. [PUMA: area_methods topic_knowledge] URL

Patrick Ebel, Ibrahim Emre Göl, Christoph Lingenfelder, and Andreas Vogelsang. Destination Prediction Based on Partial Trajectory Data. 2020. [PUMA: Based Data Destination Partial Prediction Trajectory on] URL