Publications

Robert Haase, Loic A Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, und others. CLIJ: GPU-accelerated image processing for everyone. Nature methods, (17)1:5--6, Nature Publishing Group US New York, 2020. [PUMA: zno]

Matús Kalas, Laure Plantard, Natasa Sladoje, Joakim Lindblad, Moritz Alexander Kirschmann, Martin Jones, Anatole Chessel, Leandro Aluisio Scholz, Fabienne Rössler, Alexandre Dufour, und others. EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020). ELIXIR All Hands 2020, 2020. [PUMA: zno]

Akanksha Jain, Vladimir Ulman, Arghyadip Mukherjee, Mangal Prakash, Marina B Cuenca, Lokesh G Pimpale, Stefan Münster, Robert Haase, Kristen A Panfilio, Florian Jug, und others. Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Nature communications, (11)1:5604, Nature Publishing Group UK London, 2020. [PUMA: zno]

Robert Haase, Elnaz Fazeli, David Legland, Michael Doube, Siân Culley, Ilya Belevich, Eija Jokitalo, Martin Schorb, Anna Klemm, und Christian Tischer. A hitchhiker's guide through the bio-image analysis software universe. Febs Letters, (596)19:2472--2485, 2022. [PUMA: zno]

Giovanni Volpe, Carolina Wählby, Lei Tian, Michael Hecht, Artur Yakimovich, Kristina Monakhova, Laura Waller, Ivo F. Sbalzarini, Christopher A. Metzler, Mingyang Xie, Kevin Zhang, Isaac C. D. Lenton, Halina Rubinsztein-Dunlop, Daniel Brunner, Bijie Bai, Aydogan Ozcan, Daniel Midtvedt, Hao Wang, Nataša Sladoje, Joakim Lindblad, Jason T. Smith, Marien Ochoa, Margarida Barroso, Xavier Intes, Tong Qiu, Li-Yu Yu, Sixian You, Yongtao Liu, Maxim A. Ziatdinov, Sergei V. Kalinin, Arlo Sheridan, Uri Manor, Elias Nehme, Ofri Goldenberg, Yoav Shechtman, Henrik K. Moberg, Christoph Langhammer, Barbora Špačková, Saga Helgadottir, Benjamin Midtvedt, Aykut Argun, Tobias Thalheim, Frank Cichos, Stefano Bo, Lars Hubatsch, Jesus Pineda, Carlo Manzo, Harshith Bachimanchi, Erik Selander, Antoni Homs-Corbera, Martin Fränzl, Kevin de Haan, Yair Rivenson, Zofia Korczak, Caroline Beck Adiels, Mite Mijalkov, Dániel Veréb, Yu-Wei Chang, Joana B. Pereira, Damian Matuszewski, Gustaf Kylberg, Ida-Maria Sintorn, Juan C. Caicedo, Beth A Cimini, Muyinatu A. Lediju Bell, Bruno M. Saraiva, Guillaume Jacquemet, Ricardo Henriques, Wei Ouyang, Trang Le, Estibaliz Gómez de Mariscal, Daniel Sage, Arrate Muñoz-Barrutia, Ebba Josefson Lindqvist, und Johanna Bergman. Roadmap on Deep Learning for Microscopy. 2023. [PUMA: Deep_Learning Microscopy Roadmap zno] URL

Martin Weigert, Uwe Schmidt, Robert Haase, Ko Sugawara, und Gene Myers. Star-convex polyhedra for 3D object detection and segmentation in microscopy. Proceedings of the IEEE/CVF winter conference on applications of computer vision, 3666--3673, 2020. [PUMA: zno]

A Bandurska-Luque, S Loeck, R Haase, C Richter, K Zoephel, R Perrin, A Seidlitz, S Zschaeck, S Appold, M Krause, und others. The prognostic value of FMISO-PET-based synchronous tumor and lymph node hypoxia outperforms that of tumor hypoxia only in patients with advanced stage HNSSC-secondary analysis of Dresden FMISO trail. ONCOLOGY RESEARCH AND TREATMENT, (41):186--186, 2018. [PUMA: zno]

Anna Bandurska-Luque, Steffen Löck, Robert Haase, Christian Richter, Klaus Zöphel, Nasreddin Abolmaali, Annekatrin Seidlitz, Steffen Appold, Mechthild Krause, Jörg Steinbach, und others. FMISO-PET-based lymph node hypoxia adds to the prognostic value of tumor only hypoxia in HNSCC patients. Radiotherapy and Oncology, (130):97--103, Elsevier, 2019. [PUMA: zno]

Theresa Suckert, Johannes Müller, Elke Beyreuther, Behnam Azadegan, Anja Brüggemann, Rebecca Bütof, Antje Dietrich, Malte Gotz, Robert Haase, Michael Schürer, und others. High-precision image-guided proton irradiation of mouse brain sub-volumes. Radiotherapy and Oncology, (146):205--212, Elsevier, 2020. [PUMA: zno]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, und others. Zebrahub--Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors. BioRxiv, 2023--03, Cold Spring Harbor Laboratory, 2023. [PUMA: zno]

Bruno M Saraiva, Inês M Cunha, António D Brito, Gautier Follain, Raquel Portela, Robert Haase, Pedro M Pereira, Guillaume Jacquemet, und Ricardo Henriques. NanoPyx: super-fast bioimage analysis powered by adaptive machine learning. bioRxiv, 2023--08, Cold Spring Harbor Laboratory, 2023. [PUMA: zno]

Stefan Leger, Steffen Löck, Volker Hietschold, Robert Haase, Hans Joachim Böhme, und Nasreddin Abolmaali. Physical correction model for automatic correction of intensity non-uniformity in magnetic resonance imaging. Physics and Imaging in Radiation Oncology, (4):32--38, Elsevier, 2017. [PUMA: zno]

Sebastian Zschaeck, Yimin Li, Qin Lin, Marcus Beck, Holger Amthauer, Laura Bauersachs, Marina Hajiyianni, Julian Rogasch, Vincent H Ehrhardt, Goda Kalinauskaite, und others. Prognostic value of baseline 18F-fluorodeoxyglucose positron emission tomography parameters MTV, TLG and asphericity in an international multicenter cohort of nasopharyngeal carcinoma patients. PloS one, (15)7:e0236841, Public Library of Science San Francisco, CA USA, 2020. [PUMA: zno]

Sebastian Zschaeck, Robert Haase, Nasreddin Abolmaali, Rosalind Perrin, Kristin Stützer, Steffen Appold, Jörg Steinbach, Jörg Kotzerke, Daniel Zips, Christian Richter, und others. Spatial distribution of FMISO in head and neck squamous cell carcinomas during radio-chemotherapy and its correlation to pattern of failure. Acta Oncologica, (54)9:1355--1363, Taylor & Francis, 2015. [PUMA: zno]

Anjalie Schlaeppi, Wilson Adams, Robert Haase, Jan Huisken, Ryan B MacDonald, Kevin W Eliceiri, und Elisabeth C Kugler. Meeting in the middle: towards successful multidisciplinary bioimage analysis collaboration. Frontiers in bioinformatics, (2):889755, Frontiers Media SA, 2022. [PUMA: zno]

Damla Kaptan, Sider Penkov, Xingyu Zhang, Vamshidhar R Gade, Bharath Kumar Raghuraman, Roberta Galli, Júlio L Sampaio, Robert Haase, Edmund Koch, Andrej Shevchenko, und others. Exogenous ethanol induces a metabolic switch that prolongs the survival of Caenorhabditis elegans dauer larva and enhances its resistance to desiccation. Aging Cell, (19)10:e13214, 2020. [PUMA: zno]

Johannes Hohlbein, Benedict Diederich, Barbora Marsikova, Emmanuel G Reynaud, Séamus Holden, Wiebke Jahr, Robert Haase, und Kirti Prakash. Open microscopy in the life sciences: quo vadis?. Nature methods, (19)9:1020--1025, Nature Publishing Group US New York, 2022. [PUMA: zno]

Sebastian Zschaeck, Steffen Löck, Stefan Leger, Robert Haase, Anna Bandurska-Luque, Steffen Appold, Jörg Kotzerke, Daniel Zips, Christian Richter, Volker Gudziol, und others. FDG uptake in normal tissues assessed by PET during treatment has prognostic value for treatment results in head and neck squamous cell carcinomas undergoing radiochemotherapy. Radiotherapy and Oncology, (122)3:437--444, Elsevier, 2017. [PUMA: zno]

Metin G Davutoglu, Veikko F Geyer, Lukas Niese, Johannes R Soltwedel, Marcelo L Zoccoler, Valeria Sabatino, Robert Haase, Nils Kröger, Stefan Diez, und Nicole Poulsen. Gliding motility of the diatom Craspedostauros australis coincides with the intracellular movement of raphid-specific myosins. Communications Biology, (7)1:1187, Nature Publishing Group UK London, 2024. [PUMA: zno]

Johannes Richard Soltwedel, und Robert Haase. Challenges and opportunities for bioimage analysis core-facilities. Journal of Microscopy, (294)3:338--349, 2024. [PUMA: zno]