Publications

João Paulo C. de Lima, Mehran Shoushtari Moghadam, Sercan Aygun, Jeronimo Castrillon, M. Hassan Najafi, and Asif Ali Khan. All-in-Memory Stochastic Computing using ReRAM. 2025. [PUMA: ReRAM computing stochastic xack yaff] URL

Ferdinand Schlatt, Tim Hagen, Martin Potthast, and Matthias Hagen. TITE: Token-Independent Text Encoder for Information Retrieval. Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2493–2503, ACM, July 2025. [PUMA: encoder information retrieval text yaff] URL

Joel Jonsson, Bevan Leslie Cheeseman, and Ivo Sbalzarini. APR-CNN: Convolutional Neural Networks for the Adaptive Particle Representation of Large Microscopy Images. Transactions on Machine Learning Research, 2025. [PUMA: convolutional images microscopy networks neural yaff] URL

Guilherme Korol, Antonio Carlos Schneider Beck, and Jeronimo Castrillon. Leveraging Stochastic Depth Training for Adaptive Inference. 2025. [PUMA: xackstochastic_depth_training yaff] URL

Tom Hochsprung, Jakob Runge, and Andreas Gerhardus. Using Time Structure to Estimate Causal Effects. 2025. [PUMA: causal_effects time_structure yaff] URL

Urmi Ninad, Jonas Wahl, Andreas Gerhardus, and Jakob Runge. Causal discovery on vector-valued variables and consistency-guided aggregation. 2025. [PUMA: vector-valued_variables yaff] URL

E. Cherif, T. Kattenborn, L. A. Brown, M. Ewald, K. Berger, P. D. Dao, T. B. Hank, E. Laliberté, B. Lu, and H. Feilhauer. Uncertainty Assessment in Deep Learning-based Plant Trait Retrievals from Hyperspectral data. EGUsphere, (2025):1--35, 2025. [PUMA: data deep_learning hyperspectral xack yaff] URL

Anton Gasse, Alexander Lingler, Martin Lorenz, Antti Oulasvirta, Philipp Wintersberger, and Patrick Ebel. Evaluating Attention Management Systems for Dynamic Monitoring Tasks. Adjunct Proceedings of the 4th Annual Symposium on Human-Computer Interaction for Work, 1–6, ACM, June 2025. [PUMA: attention_management_systems dynamic_monitoring_tasks xack yaff] URL

Patrick Schoefer, James Danckert, Peter Stadler, and Martin Bogdan. The Regulatory Character of Boredom in AI - Towards a Self-Regulating System based on Spiking Neural Networks. ESANN 2025 proceesdings, 317–322, Ciaco - i6doc.com, 2025. [PUMA: AI boredom self-regulating spiking_neural_networks yaff] URL

Xiaobo Lin, Zhaoqian Su, Yunchao Lance Liu, Jingxian Liu, Xiaohan Kuang, Peter T. Cummings, Jesse Spencer-Smith, and Jens Meiler. SuperMetal: a generative AI framework for rapid and precise metal ion location prediction in proteins. Journal of Cheminformatics, (17)1:107, Jul 15, 2025. [PUMA: ai framework generative metal_ion_prediction proteins xack yaff] URL

Marie Steinacker, Yuri Kheifetz, and Markus Scholz. Developing hybrid mechanistic and data-driven personalized prediction models for platelet dynamics. 2025. [PUMA: personalized platelet_dynamics prediction_models xack yaff] URL

Ali Al-Fatlawi, Md. Ballal Hossen, Stella de Paula Lopes, A. Francis Stewart, and Michael Schroeder. A structural phylogenetic tree of Rad52 and its annealase superfamily. Computational and Structural Biotechnology Journal, (27):360–368, Elsevier BV, 2025. [PUMA: xack yaff] URL

Guillermo Pérez-Hernández, and Peter W. Hildebrand. mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data. PLOS Computational Biology, (21)4:1-17, Public Library of Science, April 2025. [PUMA: molecular_dynamics visualization yaff] URL

Niclas Rosteck, Julian Striegl, and Claudia Loitsch. Bridging the Treatment Gap: A Novel LLM-Driven System for Scalable Initial Patient Assessments in Mental Healthcare. Proceedings of the Extended Abstracts of the CHI Conference on Human Factors in Computing Systems, 1–8, ACM, April 2025. [PUMA: LLM mental_healthcare patient_assessments xack yaff] URL

Yuhao Liu, Salim Ullah, and Akash Kumar. BiKA: Binarized KAN-inspired Neural Network for Efficient Hardware Accelerator Designs. 2025 IEEE 33rd Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM), 276-276, May 2025. [PUMA: BiKA hardware neural_network yaff]

Kossi Amouzouvi, Yashrajsinh Chudasama, Disha Purohit, Ariam Rivas, Bowen Song, Jens Lehmann, Sahar Vahdati, and Maria-Esther Vidal. SimE: A Knowledge Graph Embedding Model to Encode Self-Similar Structures Through Algebraic and Geometric Transformations. IEEE Access, (13):74705-74723, 2025. [PUMA: SimE algebraic geometric knowledge_graph model transformations xack yaff]

Tim Hagen, Maik Fröbe, Jan Heinrich Merker, Harrisen Scells, Matthias Hagen, and Martin Potthast. TIREx Tracker: The Information Retrieval Experiment Tracker. Proceedings of the 48th International ACM SIGIR Conference on Research and Development in Information Retrieval, 3764–3771, ACM, July 2025. [PUMA: TIREx Tracker information_retrieval yaff] URL

Jan‐Niklas Eckardt, Waldemar Hahn, Rhonda E. Ries, Szymon D. Chrost, Susann Winter, Sebastian Stasik, Christoph Röllig, Uwe Platzbecker, Carsten Müller‐Tidow, Hubert Serve, Claudia D. Baldus, Christoph Schliemann, Kerstin Schäfer‐Eckart, Maher Hanoun, Martin Kaufmann, Andreas Burchert, Johannes Schetelig, Martin Bornhäuser, Markus Wolfien, Soheil Meshinchi, Christian Thiede, and Jan Moritz Middeke. Age‐stratified machine learning identifies divergent prognostic significance of molecular alterations in AML. HemaSphere, (9)5Wiley, May 2025. [PUMA: AML machine_learning yaff] URL

Weizhou Luo, Mats Ole Ellenberg, Marc Satkowski, and Raimund Dachselt. Documents in Your Hands: Exploring Interaction Techniques for Spatial Arrangement of Augmented Reality Documents. Proceedings of the 2025 CHI Conference on Human Factors in Computing Systems, 1–22, ACM, April 2025. [PUMA: documents xackaugmented_reality yaff] URL

Amankeldi A. Salybekov, Ainur Yerkos, Martin Sedlmayr, and Markus Wolfien. Ethics and Algorithms to Navigate AI’s Emerging Role in Organ Transplantation. Journal of Clinical Medicine, (14)8:2775, MDPI AG, April 2025. [PUMA: algorithms ethics organ_transplantation yaff] URL