Publications

Najia Ahmadi, Quang Vu Nguyen, Martin Sedlmayr, und Markus Wolfien. A comparative patient-level prediction study in OMOP CDM: applicative potential and insights from synthetic data. Scientific reports, (14)1Nature Publishing Group, 27.01.2024. [PUMA: Databases, Electronic FIS_scads Factual, Health Humans, Informatics, Learning, Machine Medical Records topic_lifescience]

Suse Seidemann, Florian Salomon, Karl B Hoffmann, Thomas Kurth, Ivo F Sbalzarini, Robert Haase, und Marius Ader. Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales. FRONTIERS IN MOLECULAR NEUROSCIENCE, (17 (2024))Frontiers Media S.A., 24.05.2024. [PUMA: unit_transfer topic_lifescience FIS_scads imported]

Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, und Ivo F. Sbalzarini. Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data. 17.06.2022. [PUMA: topic_visualcomputing topic_lifescience FIS_scads Human-centered Visualization Visualization, and computing, concepts paradigms, techniques theory,]

Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, und Ivo F. Sbalzarini. Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. 29.06.2022. [PUMA: topic_visualcomputing topic_lifescience FIS_scads Human-centered Visualization Visualization, and computing, concepts paradigms techniques theory,]

Katja Hoffmann, Igor Nesterow, Yuan Peng, Elisa Henke, Daniela Barnett, Cigdem Klengel, Mirko Gruhl, Martin Bartos, Frank Nüßler, Richard Gebler, Sophia Grummt, Anne Seim, Franziska Bathelt, Ines Reinecke, Markus Wolfien, Jens Weidner, und Martin Sedlmayr. Streamlining intersectoral provision of real-world health data: a service platform for improved clinical research and patient care. Frontiers in medicine, (11):1377209, Frontiers Media S.A., 2024. [PUMA: topic_lifescience FIS_scads imported]

Katja Hoffmann, Yuan Peng, Tobias Schlosser, Gabriel Stolze, Holger Langner, Marcel Susky, Trixy Meyer, Marc Ritter, Danny Kowerko, Vinodh Kakkassery, Markus Wolfien, und Martin Sedlmayr. Towards Standardizing Ophthalmic Data for Seamless Interoperability in Eye Care. Studies in health technology and informatics, (317):139--145, IOS Press, Amsterdam u. a., 30.08.2024. [PUMA: topic_lifescience Diseases/therapy, Electronic Eye FIS_scads Germany, Health Humans, Information Interoperability/standards, Learning, Level Machine Ophthalmology Records/standards, Seven/standards,]

Daniel Bühler, Nicole Power Guerra, Luisa Müller, Olaf Wolkenhauer, Martin Düffer, Brigitte Vollmar, Angela Kuhla, und Markus Wolfien. Leptin deficiency-caused behavioral change - A comparative analysis using EthoVision and DeepLabCut. Frontiers in neuroscience, (17)Frontiers Media S.A., 24.03.2023. [PUMA: topic_lifescience Behavioral Deep DeepLabCut, EthoVision, FIS_scads Obesity analysis, learning,]

Praveen Vasudevan, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Anne-Marie Galow, Dirk Koczan, Tobias Lindner, Wendy Bergmann, Brigitte Mueller-Hilke, Brigitte Vollmar, Bernd Joachim Krause, Olaf Wolkenhauer, Gustav Steinhoff, und Robert David. CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation. Genome medicine, (15)1BioMed Central, London, 10.08.2023. [PUMA: topic_lifescience Animals, C57BL, Cardiac/metabolism, Cell FIS_scads Immunocompromised, Inbred Infarction, Machine Macrophages, Macrophages/metabolism, Mice, Monocytes/metabolism Myocardial Myocytes, Single-cell, infarction, learning, therapy,]

Markus Wolfien, Najia Ahmadi, Kai Fitzer, Sophia Grummt, Kilian-Ludwig Heine, Ian-C Jung, Dagmar Krefting, Andreas Kühn, Yuan Peng, Ines Reinecke, Julia Scheel, Tobias Schmidt, Paul Schmücker, Christina Schüttler, Dagmar Waltemath, Michele Zoch, und Martin Sedlmayr. Ten Topics to Get Started in Medical Informatics Research. Journal of Medical Internet Research, (25)JMIR Publications Inc., 24.07.2023. [PUMA: topic_lifescience Algorithms, Clinical Curriculum, Digital FIS_scads Germany, Health Humans, Informatics, Interdisciplinary Medical Research clinical communication, data, digital health health, informatics informatics, interdisciplinary medical research]

Amankeldi A Salybekov, Markus Wolfien, Waldemar Hahn, Sumi Hidaka, und Shuzo Kobayashi. Artificial Intelligence Reporting Guidelines' Adherence in Nephrology for Improved Research and Clinical Outcomes. Biomedicines, (12)3MDPI, Basel, 07.03.2024. [PUMA: topic_lifescience FIS_scads imported]

Robert Haase. Towards Transparency and Knowledge Exchange in AI- assisted Data Analysis Code Generation. Zenodo, Oktober 2024. [PUMA: unit_transfer topic_language topic_lifescience] URL

Johannes Soltwedel, Theresa Suckert, Elke Beyreuther, Moritz Schneider, Marc Boucsein, Elisabeth Bodenstein, Sindi Nexhipi, Liane Stolz-Kieslich, Mechthild Krause, Cläre von Neubeck, Robert Haase, und others. Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D. Radiotherapy and Oncology, (182):109591, Elsevier, 2023. [PUMA: topic_lifescience]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Robert Haase, und others. Zebrahub--Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors. BioRxiv, 2023--03, Cold Spring Harbor Laboratory, 2023. [PUMA: topic_lifescience]

Luke Sorensen, Adam Humenick, Sabrina SB Poon, Myat Noe Han, Narges S Mahdavian, Matthew C Rowe, Ryan Hamnett, Estibaliz Gómez-de Mariscal, Peter H Neckel, Ayame Saito, Robert Haase, und others. Gut Analysis Toolbox--automating quantitative analysis of enteric neurons. Journal of Cell Science, (137)20The Company of Biologists, 2024. [PUMA: topic_lifescience]

Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Robert Haase, und others. Metrics reloaded: recommendations for image analysis validation. Nature methods, (21)2:195--212, Nature Publishing Group US New York, 2024. [PUMA: topic_lifescience]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Robert Haase, und others. A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors. Cell, (187)23:6742--6759, Elsevier, 2024. [PUMA: topic_lifescience]

Bernhard Vogginger, Amirhossein Rostami, Vaibhav Jain, Sirine Arfa, Andreas Hantsch, David Kappel, Michael Schäfer, Ulrike Faltings, Hector A. Gonzalez, Chen Liu, und Christian Mayr. Neuromorphic hardware for sustainable AI data centers. Zenodo, 2024. [PUMA: area_responsibleai topic_lifescience] URL

Markus Bauer, und Christoph Augenstein. Self-supervised learning in histopathology: New perspectives for prostate cancer grading. Lecture Notes in Computer Science, 348--360, Springer Nature Switzerland, Cham, 2024. [PUMA: Yaff cancer grading histopathology learning prostate self-supervised topic_lifescience]

Sahar Vahdati, Deepankan Bharathi Nagaraj, Maximilian Bryan, Sobhan Moazemi, Sabine Gründer-Fahrer, und Michael Martin. Utilizing transformers on OCT imagery and metadata for treatment response prediction in macular edema patients. Lecture Notes in Computer Science, 3--15, Springer Nature Switzerland, Cham, 2023. [PUMA: OCT Xack edema macular prediction response topic_lifescience transformers treatment]

Antonia Stubenvoll, Maria Schmidt, Johanna Moeller, Max Alexander Lingner Chango, Carolyn Schultz, Olga Antoniadou, Henry Loeffler-Wirth, Stephan Bernhart, Florian Peter Große, Beatrice Thier, Annette Paschen, Ulf Anderegg, Jan C. Simon, Mirjana Ziemer, Clara T. Schoeder, Hans Binder, und Manfred Kunz. Single-cell transcriptomics and epigenomics point to CD58-CD2 interaction in controlling primary melanoma growth and immunity. Cancer Communications, (n/a)n/aJohn Wiley & Sons, Ltd, Januar 2025. [PUMA: Yaff melanoma myown single-cell topic_lifescience transcriptomics] URL