Publications

Eli Fritz McDonald, Hope Woods, Shannon T Smith, Minsoo Kim, Clara T Schoeder, Lars Plate, and Jens Meiler. Structural comparative modeling of multi-domain F508del CFTR. Biomolecules, (12)3:471, MDPI AG, March 2022. [PUMA: VX-809; chaperones; comparative computational cystic discovery disease; drug fibrosis; folding modeling; pharmacological protein structure-based topic_lifescience]

Davide Sala, Diego Del Alamo, Hassane S Mchaourab, and Jens Meiler. Modeling of protein conformational changes with Rosetta guided by limited experimental data. Structure, (30)8:1157--1168.e3, Elsevier BV, August 2022. [PUMA: EPR Rosetta; biology; changes; conformational dynamics; integrative modeling; molecular protein refinement spectroscopy; structural structure topic_lifescience]

A D Lokits, H Indrischek, J Meiler, H E Hamm, and P F Stadler. Tracing the evolution of the heterotrimeric G protein $\alpha$ subunit in Metazoa. BMC Evol. Biol., (18)1:51, April 2018. [PUMA: Evolution; G Genome Heterotrimeric Orthology; Paralog; Whole annotation; coupled duplication genome protein protein; receptors; topic_lifescience]

Eli Fritz McDonald, Taylor Jones, Lars Plate, Jens Meiler, and Alican Gulsevin. Benchmarking AlphaFold2 on peptide structure prediction. Structure, (31)1:111--119.e2, Elsevier BV, January 2023. [PUMA: AlphaFold2; benchmark; bonds; disulfide folding; pLDDT; peptides; prediction protein structure topic_lifescience]

Davide Sala, Peter W Hildebrand, and Jens Meiler. Biasing AlphaFold2 to predict GPCRs and kinases with user-defined functional or structural properties. Front. Mol. Biosci., (10):1121962, February 2023. [PUMA: (G-protein-coupled AlphaFold; GPCRs function; kinases; prediction protein receptors); structure topic_lifescience]