Publications

Peter F Stadler, und Jörg Fallmann. Deutsches Netzwerk für Bioinformatik Infrastruktur, de. NBI, RNA Bioinformatics Center-Leipzig. Professur für Bioinformatik, Institut für Informatik, Universität Leipzig, 2022. [PUMA: Bioinformatics Bioinformatik Infrastruktur Netzwerk RNA nopdf zno]

Anderson P. Avila Santos, Breno L. S. de Almeida, Robson P. Bonidia, Peter F. Stadler, Polonca Stefanic, Ines Mandic-Mulec, Ulisses Rocha, Danilo S. Sanches, und André C.P.L.F. de Carvalho. BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification. RNA Biology, (21)1:410–421, Informa UK Limited, März 2024. [PUMA: BioDeepfuse RNA Zno classification deep extraction feature learning non-coding] URL

Dustyn Eggers, Christian Höner zu Siederdissen, und Peter F. Stadler. Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure nopdf] URL

Leonhard Sidl, Maximilian Faissner, Manuel Uhlir, Cristian A Velandia-Huerto, Maria Waldl, Hua-Ting Yao, Ivo L Hofacker, und Peter F Stadler. A Relation between Natural Selection and Computational Complexity. Oktober 2024. [PUMA: Biological Complexity Computation Computational Developmental Folding Genotype-Phenotype Map Program RNA zno] URL

V Janett Olzog, Christiane Gärtner, Peter F Stadler, Jörg Fallmann, und Christina E Weinberg. cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends. RNA Biol., (18)sup2:818--831, Informa UK Limited, November 2021. [PUMA: (RppH); 5ʹ-3ʹ KQ; RNA RtcB T4 Xrn1; exonuclease ligase ligase; next-generation pyrophosphohydrolase sequencing truncated]

Ronny Lorenz, und Peter F Stadler. RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, Dezember 2020. [PUMA: RNA algorithm elements; hyper-stable prediction; scanning secondary structure]