Network shape intelligence outperforms AlphaFold2 intelligence in vanilla protein interaction prediction. bioRxiv, August 2023. [PUMA: AlphaFold2 Xack intelligence interaction prediction protein vanilla]
Interplay of thermodynamics and evolution within the ternary ligand-GPCR-G protein complex. Curr. Opin. Struct. Biol., (82):102656, Oktober 2023. [PUMA: Interplay Zno complex protein ternary thermodynamics {ligand-GPCR-G}]
RNAcode_Web – Convenient identification of evolutionary conserved protein coding regions. Journal of Integrative Bioinformatics, (20)3Walter de Gruyter GmbH, August 2023. [PUMA: RNAcode_Web coding evolutionary identification protein regions zno] URL
Combining Rosetta Sequence Design with Protein Language Model Predictions Using Evolutionary Scale Modeling (ESM) as Restraint. ACS Synthetic Biology, (13)4:1085--1092, ACS Publications, 2024. [PUMA: topic_lifescience ESM combining design protein rosetta sequence]
Structural comparative modeling of multi-domain F508del CFTR. Biomolecules, (12)3:471, MDPI AG, März 2022. [PUMA: topic_lifescience VX-809; chaperones; comparative computational cystic discovery disease; drug fibrosis; folding modeling; pharmacological protein structure-based]
Modeling of protein conformational changes with Rosetta guided by limited experimental data. Structure, (30)8:1157--1168.e3, Elsevier BV, August 2022. [PUMA: topic_lifescience EPR Rosetta; biology; changes; conformational dynamics; integrative modeling; molecular protein refinement spectroscopy; structural structure]
Tracing the evolution of the heterotrimeric G protein $\alpha$ subunit in Metazoa. BMC Evol. Biol., (18)1:51, April 2018. [PUMA: Evolution; G Genome Heterotrimeric Orthology; Paralog; Whole annotation; coupled duplication genome protein protein; receptors; topic_lifescience]