Publications

Neringa Jurenaite, Daniel León-Periñán, Veronika Donath, Sunna Torge, and René Jäkel. SetQuence & SetOmic: Deep set transformers for whole genome and exome tumour analysis. BioSystems, (235)Elsevier, January 2024. [PUMA: topic_federatedlearn livinglab Artificial Biomedical Exome/genetics, FIS_scads Humans, Intelligence, Medical Neoplasms/genetics Oncology, Research,]

Neringa Jurenaite, Daniel Leon-Perinan, Veronika Donath, Sunna Torge, and Rene Jakel. SetQuence & SetOmic: Deep Set Transformer-based Representations of Cancer Multi-Omics. 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2022, 139--147, IEEE, New York u. a., United States of America, 2022. [PUMA: topic_federatedlearn livinglab Deep FIS_scads Network, Neural Representations Set analysis, expression, gene genome, language molecular multi-omics, mutome, natural processing, sequence]

Neringa Jurenaite, Daniel León-Periñán, Veronika Donath, Sunna Torge, and René Jäkel. SetQuence & SetOmic: Deep Set Transformer-based Representations of Cancer Multi-Omics. 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 1-9, August 2022. [PUMA: topic_federatedlearn livinglab topic_lifescience]

Neringa Jurenaite, Daniel León-Periñán, Veronika Donath, Sunna Torge, and René Jäkel. SetQuence & SetOmic: Deep Set Transformers for Whole Genome and Exome Tumour Analysis. BioSystems, (235):105095, Elsevier BV, January 2024. [PUMA: topic_federatedlearn livinglab topic_lifescience] URL

Erhard Rahm, Wolfgang E Nagel, Eric Peukert, René Jäkel, Fabian Gärtner, Peter F Stadler, Daniel Wiegreffe, Dirk Zeckzer, and Wolfgang Lehner. Big Data Competence Center ScaDS Dresden/Leipzig: Overview and selected research activities. Datenbank Spektrum, (19)1:5--16, Springer Science and Business Media LLC, March 2019. [PUMA: livinglab]