Publications

Carina Geldhauser, and Hermann Diebel-Fischer. Is diverse and inclusive AI trapped in the gap between reality and algorithmizability?. Northern Lights Deep Learning Conference, 75--80, 2024. [PUMA: imported]

Birte Platow. Verdrängung des Menschen?. Zuversichtsargumente, 245--264, Brill Schöningh, 2022. [PUMA: imported]

Loubna Ben Allal, Raymond Li, Denis Kocetkov, Chenghao Mou, Christopher Akiki, Carlos Munoz Ferrandis, Niklas Muennighoff, Mayank Mishra, Alex Gu, Manan Dey, Logesh Kumar Umapathi, Carolyn Jane Anderson, Yangtian Zi, Joel Lamy Poirier, Hailey Schoelkopf, Sergey Troshin, Dmitry Abulkhanov, Manuel Romero, Michael Lappert, Francesco De Toni, Bernardo García del Río, Qian Liu, Shamik Bose, Urvashi Bhattacharyya, Terry Yue Zhuo, Ian Yu, Paulo Villegas, Marco Zocca, Sourab Mangrulkar, David Lansky, Huu Nguyen, Danish Contractor, Luis Villa, Jia Li, Dzmitry Bahdanau, Yacine Jernite, Sean Hughes, Daniel Fried, Arjun Guha, Harm de Vries, and Leandro von Werra. SantaCoder: don't reach for the stars!. 2023. [PUMA: imported] URL

Magdalena Wolska, Christopher Schröder, Ole Borchardt, Benno Stein, and Martin Potthast. Trigger Warnings: Bootstrapping a Violence Detector for FanFiction. September 2022. [PUMA: imported]

Richard Grunzke, Volker Hartmann, T. Jejkal, Ajinkya Prabhune, Hendrik Herold, Aline Deicke, Alexander Hoffmann, Torsten Schrade, Gotthard Meinel, Sonja Herres-Pawlis, Rainer Stotzka, and Wolfgang Nagel. Towards a metadata-driven multi-community research data management service. February 2017. [PUMA: imported]

Hermann Diebel-Fischer, and Christoph Lehmann. Lost in translation? Capturing the world in data considering ethics. June 2022. [PUMA: imported]

Mehdi Ali, Charles Hoyt, Daniel Domingo-Fernández, and Jens Lehmann. Predicting Missing Links Using PyKEEN. August 2019. [PUMA: imported]

Michael Völske, Janek Bevendorff, Johannes Kiesel, Benno Stein, Maik Fröbe, Matthias Hagen, and Martin Potthast. Web Archive Analytics. July 2021. [PUMA: imported]

Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, and Ivo Sbalzarini. Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. June 2022. [PUMA: imported]

Michelle Nixon, Jeffrey Letourneau, Lawrence David, Sayan Mukherjee, and Justin Silverman. A Statistical Analysis of Compositional Surveys. January 2022. [PUMA: imported]

Teven Scao, Angela Fan, Christopher Akiki, Ellie Pavlick, Suzana Ilić, Daniel Hesslow, Roman Castagné, Alexandra Luccioni, François Yvon, Matthias Gallé, Jonathan Tow, Alexander Rush, Stella Biderman, Albert Webson, Pawan Ammanamanchi, Thomas Wang, Benoît Sagot, Niklas Muennighoff, Albert Moral, and Thomas Wolf. BLOOM: A 176B-Parameter Open-Access Multilingual Language Model. November 2022. [PUMA: imported]

Diego Alamo, Jens Meiler, and Hassane Mchaourab. Principles of Alternating Access in LeuT-fold Transporters: Commonalities and Divergences. May 2022. [PUMA: imported]

Carsten Lutz, and Quentin Manière. Adding Circumscription to Decidable Fragments of First-Order Logic: A Complexity Rollercoaster. July 2024. [PUMA: imported]

Afshin Sadeghi, Damien Graux, and Jens Lehmann. MDE: Multi Distance Embeddings for Link Prediction in Knowledge Graphs. May 2019. [PUMA: imported]

David Schaller, Marc Hellmuth, and Peter Stadler. A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set. July 2021. [PUMA: imported]

Philipp Sauer, Janek Bevendorff, Lukas Gienapp, Wolfgang Kircheis, Erik Körner, Benno Stein, and Martin Potthast. SMAuC -- The Scientific Multi-Authorship Corpus. November 2022. [PUMA: imported]

Robin Maack, Gerik Scheuermann, Jose Hernandez, and Christina Gillmann. Uncertainty-aware Visual Analytics - Scope, Oppertunities and Challenges. December 2021. [PUMA: imported]

Stefan Borgwardt, Filippo De Bortoli, and Patrick Koopmann. The Precise Complexity of Reasoning in $ALC$ with $ømega$-Admissible Concrete Domains (Extended Version). 2024. [PUMA: imported] URL

Franz Baader, and Filippo De Bortoli. Logics with Concrete Domains: First-Order Properties, Abstract Expressive Power, and (Un)Decidability. SIGAPP Appl. Comput. Rev., (24)3:5–17, Association for Computing Machinery, New York, NY, USA, Oct 8, 2024. [PUMA: imported] URL

C.J.R. Murphy-Barltrop, and J.L. Wadsworth. Modelling Non-Stationarity in Asymptotically Independent Extremes. Computational Statistics and Data Analysis, (199):108025, Elsevier BV, November 2024. [PUMA: imported] URL

E. B. L. Mackay, C. J. R. Murphy-Barltrop, and P. Jonathan. The SPAR Model: A New Paradigm for Multivariate Extremes: Application to Joint Distributions of Metocean Variables. Journal of Offshore Mechanics and Arctic Engineering, (147)1ASME International, July 2024. [PUMA: imported] URL

C. J. R. Murphy-Barltrop, J. L. Wadsworth, and E. F. Eastoe. Improving Estimation for Asymptotically Independent Bivariate Extremes via Global Estimators for the Angular Dependence Function. Extremes, Aug 13, 2024. [PUMA: imported] URL

Robert Haase, Christian Tischer, Jean-Karim Heriche, and Nico Scherf. Benchmarking Large Language Models for Bio-Image Analysis Code Generation. Cold Spring Harbor Laboratory, April 2024. [PUMA: imported] URL

Lennart J. Schulze, Sachin K. Thekke Veettil, and Ivo F. Sbalzarini. A high-order fully Lagrangian particle level-set method for dynamic surfaces. CoRR, (abs/2306.07986)2023. [PUMA: imported]

Giovanni Volpe, Carolina W�hlby, Lei Tian, Michael Hecht, Artur Yakimovich, Kristina Monakhova, Laura Waller, Ivo F. Sbalzarini, Christopher A. Metzler, Mingyang Xie, Kevin Zhang, Isaac C. D. Lenton, Halina Rubinsztein-Dunlop, Daniel Brunner, Bijie Bai, Aydogan Ozcan, Daniel Midtvedt, Hao Wang, Nata�a Sladoje, Joakim Lindblad, Jason T. Smith, Marien Ochoa, Margarida Barroso, Xavier Intes, Tong Qiu, Li-Yu Yu, Sixian You, Yongtao Liu, Maxim A. Ziatdinov, Sergei V. Kalinin, Arlo Sheridan, Uri Manor, Elias Nehme, Ofri Goldenberg, Yoav Shechtman, Henrik K. Moberg, Christoph Langhammer, Barbora �pa?kov�, Saga Helgadottir, Benjamin Midtvedt, Aykut Argun, Tobias Thalheim, Frank Cichos, Stefano Bo, Lars Hubatsch, Jesus Pineda, Carlo Manzo, Harshith Bachimanchi, Erik Selander, Antoni Homs-Corbera, Martin Fr�nzl, Kevin de Haan, Yair Rivenson, Zofia Korczak, Caroline Beck Adiels, Mite Mijalkov, D�niel Ver�b, Yu-Wei Chang, Joana B. Pereira, Damian Matuszewski, Gustaf Kylberg, Ida-Maria Sintorn, Juan C. Caicedo, Beth A Cimini, Muyinatu A. Lediju Bell, Bruno M. Saraiva, Guillaume Jacquemet, Ricardo Henriques, Wei Ouyang, Trang Le, Estibaliz G�mez de Mariscal, Daniel Sage, Arrate Mu�oz-Barrutia, Ebba Josefson Lindqvist, and Johanna Bergman. Roadmap on Deep Learning for Microscopy. 2023. [PUMA: imported] URL

Tina Subic, and Ivo F. Sbalzarini. A Gaussian jump process formulation of the reaction�diffusion master equation enables faster exact stochastic simulations. The Journal of Chemical Physics, (157)19AIP Publishing, November 2022. [PUMA: imported] URL

Mateusz Susik, and Ivo F. Sbalzarini. Variational inference accelerates accurate DNA mixture deconvolution. Forensic Science International: Genetics, (65):102890, Elsevier BV, July 2023. [PUMA: imported] URL

Huw Colin?York, John Heddleston, Eric Wait, Narain Karedla, Michael deSantis, Satya Khuon, Teng?Leong Chew, Ivo F. Sbalzarini, and Marco Fritzsche. Quantifying Molecular Dynamics within Complex Cellular Morphologies using LLSM?FRAP (Small Methods 6/2022). Small Methods, (6)6Wiley, June 2022. [PUMA: imported] URL

Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, and Philippe Poncet. Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems. J. Comput. Phys., (491):112342, 2023. [PUMA: imported]

Mateusz Susik, Holger Schönborn, and Ivo F. Sbalzarini. Hamiltonian Monte Carlo with strict convergence criteria reduces run-to-run variability in forensic DNA mixture deconvolution. Forensic Science International: Genetics, (60):102744, Elsevier BV, September 2022. [PUMA: imported] URL

Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, and Ivo F. Sbalzarini. Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates. 2023 IEEE 16th Pacific Visualization Symposium (PacificVis), (19):61�70, IEEE, April 2023. [PUMA: imported] URL

Nesrine Khouzami, Friedrich Michel, Pietro Incardona, Jeronimo Castrillon, and Ivo F. Sbalzarini. Model-based autotuning of discretization methods in numerical simulations of partial differential equations. Journal of Computational Science, (57):101489, Elsevier BV, January 2022. [PUMA: imported] URL

Abhinav Singh, Philipp H. Suhrcke, Pietro Incardona, and Ivo F. Sbalzarini. A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence. Physics of Fluids, (35)10AIP Publishing, October 2023. [PUMA: imported] URL

Nikola Milosevic, Gesine M�ller, Jan Huisken, and Nico Scherf. Open Problem: Active Representation Learning. 2024. [PUMA: imported] URL

Abhinav Singh, Quentin Vagne, Frank Jülicher, and Ivo F. Sbalzarini. Spontaneous flow instabilities of active polar fluids in three dimensions. Phys. Rev. Res., (5)2:L022061, American Physical Society, June 2023. [PUMA: imported] URL

Abhinav Singh, Landfried Kraatz, Pietro Incardona, and Ivo F. Sbalzarini. A Distributed Algebra System for Time Integration on Parallel Computers. CoRR, (abs/2309.05331)2023. [PUMA: imported]

Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, and Ivo F. Sbalzarini. A portable C++ library for memory and compute abstraction on multi?core CPUs and GPUs. Concurrency and Computation: Practice and Experience, (35)25Wiley, July 2023. [PUMA: imported] URL

Charlotte Beylier, Simon M. Hofmann, and Nico Scherf. Revealing the learning process in reinforcement learning agents through attention-oriented metrics. 2024. [PUMA: imported] URL

Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, and Ivo F. Sbalzarini. STENCIL-NET for equation-free forecasting from data. Scientific Reports, (13)1Springer Science and Business Media LLC, August 2023. [PUMA: imported] URL

Johannes Pahlke, and Ivo F. Sbalzarini. Computational Power of Particle Methods. CoRR, (abs/2304.10286)2023. [PUMA: imported]

Dominik Sturm, Suryanarayana Maddu, and Ivo F. Sbalzarini. Learning locally dominant force balances in active particle systems. CoRR, (abs/2307.14970)2023. [PUMA: imported]

Michele Caprio, Andrea Aveni, and Sayan Mukherjee. Concerning Two Classes of Non-Diophantine Arithmetics. Proceedings, (81):33, March 2022. [PUMA: imported]

Abhinav Singh, Ivo F. Sbalzarini, and Anas Obeidat. Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics. Computers & Fluids, (267):106074, Elsevier BV, December 2023. [PUMA: imported] URL

Nicola Gigante, Luc\'ıa Gómez Álvarez, and Tim Lyon. Standpoint Linear Temporal Logic. Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, 311--321, IJCAI Inc, 2023. [PUMA: imported]

Pascal Kerschke, and Mike Preuss. Exploratory Landscape Analysis. Proceedings of the Companion Conference on Genetic and Evolutionary Computation, 990–1007, Association for Computing Machinery, New York, NY, USA, Jul 24, 2023. [PUMA: imported] URL

Luisa Herrmann, Vincent Peth, and Sebastian Rudolph. Decidable (Ac)counting with Parikh and Muller: Adding Presburger Arithmetic to Monadic Second-Order Logic over Tree-Interpretable Structures. In Aniello Murano, and Alexandra Silva (Eds.), 32nd EACSL Annual Conference on Computer Science Logic (CSL 2024), (288):33:1--33:19, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2024. [PUMA: imported] URL

Marzieh Eidi. Topological and geometric methods with a view towards data analysis. xiv, 76, 2022. [PUMA: imported] URL

Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, and Peter F. Stadler. Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package. Algorithms for Molecular Biology, (18)1:8, July 2023. [PUMA: imported] URL

Luc\'ıa Gómez Álvarez, Sebastian Rudolph, and Hannes Straß. Pushing the Boundaries of Tractable Multiperspective Reasoning: A Deduction Calculus for Standpoint EL+. In Pierre Marquis, Tran Cao Son, and Gabriele Kern-Isberner (Eds.), Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, 333--343, IJCAI Inc, 2023. [PUMA: imported]

Parvaneh Joharinad, and Jürgen Jost. Mathematical principles of topological and geometric data analysis. Mathematics of data, (2):ix, 281, Springer, Cham, 2023. [PUMA: imported]