Publications

David Schaller, Marc Hellmuth, and Peter Stadler. A Linear-Time Algorithm for the Common Refinement of Rooted Phylogenetic Trees on a Common Leaf Set. July 2021. [PUMA: imported]

Lydia Müller, Daniel Gerighausen, Mariam Farman, and Dirk Zeckzer. Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and-steering. BMC bioinformatics, (17):1--13, Springer, 2016. [PUMA: imported]

Markus Ulbricht. Understanding Inconsistency – A Contribution to the Field of Non-monotonic Reasoning. October 2019. [PUMA: imported]

Philipp Sauer, Janek Bevendorff, Lukas Gienapp, Wolfgang Kircheis, Erik Körner, Benno Stein, and Martin Potthast. SMAuC -- The Scientific Multi-Authorship Corpus. November 2022. [PUMA: imported]

Matti Wiegmann, Benno Stein, and Martin Potthast. Overview of the Celebrity Profiling Task at PAN 2020. In Linda Cappellato, Carsten Eickhoff, Nicola Ferro, and Aurélie Névéol (Eds.), Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum, Thessaloniki, Greece, September 22-25, 2020, (2696)CEUR-WS.org, 2020. [PUMA: imported] URL

Jan Ewald, Ziyang He, Wassili Dimitriew, and Stefan Schuster. Including glutamine in a resource allocation model of energy metabolism in cancer and yeast cells. npj Systems Biology and Applications, (10)1Springer Science and Business Media LLC, July 2024. [PUMA: imported] URL

Ringo Baumann, Gerhard Brewka, and Markus Ulbricht. Revisiting the Foundations of Abstract Argumentation – Semantics Based on Weak Admissibility and Weak Defense. Proceedings of the AAAI Conference on Artificial Intelligence, (34)03:2742–2749, Association for the Advancement of Artificial Intelligence (AAAI), April 2020. [PUMA: imported] URL

Marianne Kneuer, and Stefan Wallaschek. Framing COVID-19: Public Leadership and Crisis Communication By Chancellor Angela Merkel During the Pandemic in 2020. German Politics, (32):1--24, March 2022. [PUMA: imported]

Julian Eberius, Katrin Braunschweig, Markus Hentsch, Maik Thiele, Ahmad Ahmadov, and Wolfgang Lehner. Building the Dresden web table corpus: A classification approach. 2015 IEEE/ACM 2nd International Symposium on Big Data Computing (BDC), IEEE, December 2015. [PUMA: imported]

Daniel Wiegreffe, Daniel Alexander, Peter F Stadler, and Dirk Zeckzer. RNApuzzler: efficient outerplanar drawing of RNA-secondary structures. In Alfonso Valencia (Eds.), Bioinformatics, (35)8:1342–1349, Oxford University Press (OUP), September 2018. [PUMA: imported] URL

Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nojgaard, and Peter F Stadler. Generic context-aware group contributions. IEEE/ACM Trans. Comput. Biol. Bioinform., (19)1:429--442, Institute of Electrical and Electronics Engineers (IEEE), January 2022. [PUMA: imported]

Dirk Zeckzer, Daniel Wiegreffe, and Lydia Müller. Analyzing Histone Modifications in iPS Cells Using Tiled Binned 3D Scatter Plots. November 2016. [PUMA: imported]

Birte Platow. Digitalisierung/Big Data/KI. 2021. [PUMA: imported]

Hermann Diebel-Fischer. Ethics and Quantification: Disentangling a Relationship. 2021. [PUMA: imported]

Martin Potthast, Tim Gollub, Matti Wiegmann, and Benno Stein. TIRA Integrated Research Architecture. Information Retrieval Evaluation in a Changing World, 123–160, Springer International Publishing, July 2019. [PUMA: imported] URL

Erhard Rahm. The Case for Holistic Data Integration. August 2016. [PUMA: imported]

Bubryur Kim, KR Sri Preethaa, Zengshun Chen, Yuvaraj Natarajan, Gitanjali Wadhwa, and Hong Min Lee. Predicting the lateral displacement of tall buildings using an LSTM-based deep learning approach. Wind and Structures, (36)6:379--392, Techno-Press, 2023. [PUMA: imported]

Christian Schwarke. Art. Technikethik. 2023. [PUMA: imported]

Halima Saker, Rainer Machné, Jörg Fallmann, Douglas B. Murray, Ahmad M. Shahin, and Peter F. Stadler. Weighted Consensus Segmentations. Computation, (9)2:17, MDPI AG, February 2021. [PUMA: imported] URL

Daniel Wiegreffe, Alrik Hausdorf, Sebastian Zänker, and Dirk Zeckzer. iDotter – an interactive dot plot viewer. May 2017. [PUMA: imported]

Birte Platow. Gott mit seinem perfekten Ebendbild zu konfrontieren.... Religionspädagogische Beiträge, (82):37--47, 2020. [PUMA: imported]

Balder ten Cate, Maurice Funk, Jean Christoph Jung, and Carsten Lutz. SAT-Based PAC Learning of Description Logic Concepts. Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, IJCAI 2023, 19th-25th August 2023, Macao, SAR, China, 3347--3355, ijcai.org, 2023. [PUMA: imported] URL

Wolfgang E Nagel, René Jäkel, and Ralph Müller-Pfefferkorn. Execution environments for Big Data: Challenges for user centric scenarios. BDEC white paper BDEC. Proc. Int. Workshop on Extreme Scale Scientific Computing (Big Data and Extreme Computing, BDEC), Barcelona, 2015. [PUMA: imported]

Norman Spangenberg, Moritz Wilke, and Bogdan Franczyk. A Big Data architecture for intra-surgical remaining time predictions. Procedia Computer Science, (113):310--317, December 2017. [PUMA: imported]

Milad Alshomary, Michael Völske, Tristan Licht, Henning Wachsmuth, Benno Stein, Matthias Hagen, and Martin Potthast. Wikipedia Text Reuse: Within and Without. Advances in Information Retrieval, 747–754, Springer International Publishing, 2019. [PUMA: imported] URL

Adam Nunn, Isaac Rodr\'ıguez-Arévalo, Zenith Tandukar, Katherine Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos-Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, Brice Jarvis, John Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A. Anderson, Claude Becker, and Ratan Chopra. Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates. bioRxiv, Cold Spring Harbor Laboratory, 2021. [PUMA: imported] URL

Jochen Tiepmar, Thomas Eckart, Dirk Goldhahn, and Christoph Kuras. Canonical text services in CLARIN--Reaching out to the Digital Classics and beyond. CLARIN Annual Conference, 2016. [PUMA: imported]

Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, and Ivo Sbalzarini. Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. June 2022. [PUMA: imported]

Katrin Braunschweig., Maik Thiele., Elvis Koci., and Wolfgang Lehner.. Putting Web Tables into Context. Proceedings of the 8th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (IC3K 2016) - KDIR, 158--165, SciTePress, 2016. [PUMA: imported]

Jan Frenzel, Kim Feldhoff, Ren´e J¨akel, and Ralph M¨uller-Pfefferkorn. Tracing of Multi-Threaded Java Applications in Score-P Using JVMTI and User Instrumentation. 2017. [PUMA: imported] URL

Charles P. Kuntz, Hope Woods, Andrew G. McKee, Nathan B. Zelt, Jeffrey L. Mendenhall, Jens Meiler, and Jonathan P. Schlebach. Towards generalizable predictions for G protein-coupled receptor variant expression. Biophysical Journal, (121)14:2712--2720, 2022. [PUMA: imported] URL

Jan Frenzel, and René Jäkel. Job Performance Overview of Apache Flink and Apache Spark Applications. 2019. [PUMA: imported]

Diego Alamo, Jens Meiler, and Hassane Mchaourab. Principles of Alternating Access in LeuT-fold Transporters: Commonalities and Divergences. May 2022. [PUMA: imported]

Janek Bevendorff, Martin Potthast, Matthias Hagen, and Benno Stein. Heuristic Authorship Obfuscation. In Anna Korhonen, David Traum, and Llu\'ıs Màrquez (Eds.), Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, 1098--1108, Association for Computational Linguistics, Florence, Italy, July 2019. [PUMA: imported] URL

Victor Christen, Anika Groß, Julian Varghese, Martin Dugas, and Erhard Rahm. Annotating medical forms using UMLS. Lecture Notes in Computer Science, 55--69, Springer International Publishing, Cham, 2015. [PUMA: imported]

Birte Platow. Zur Zukunft digitalisierter Bildung aus evangelischer Sicht. 2021. [PUMA: imported]

Julius Gonsior, Josephine Rehak, Maik Thiele, Elvis Koci, Michael Günther, and Wolfgang Lehner. Active Learning for Spreadsheet Cell Classification. In Alexandra Poulovassilis, David Auber, Nikos Bikakis, Panos K. Chrysanthis, George Papastefanatos, Mohamed A. Sharaf, Nikos Pelekis, Chiara Renso, Yannis Theodoridis, Karine Zeitouni, Tania Cerquitelli, Silvia Chiusano, Genoveva Vargas-Solar, Behrooz Omidvar-Tehrani, Katharina Morik, Jean-Michel Renders, Donatella Firmani, Letizia Tanca, Davide Mottin, Matteo Lissandrini, and Yannis Velegrakis (Eds.), Proceedings of the Workshops of the EDBT/ICDT 2020 Joint Conference, Copenhagen, Denmark, March 30, 2020, (2578)CEUR-WS.org, 2020. [PUMA: imported] URL

Sunna Torge, Waldemar Hahn, and Rene Jakel. Transfer Learning for Domain-Specific Named Entity Recognition in German. 2020 6th IEEE Congress on Information Science and Technology (CiSt), (abs 1910 6241):321–327, IEEE, June 2020. [PUMA: imported] URL

Birte Platow. Isten és az új istenek: Az Istenbe vetett hit technicista felváltásáról és annak működőképességéről. 2022. [PUMA: imported]

Ziad Sehili, and Erhard Rahm. Speeding up privacy preserving record linkage for metric space similarity measures. Datenbank Spektrum, (16)3:227--236, Springer Science and Business Media LLC, November 2016. [PUMA: imported]

Pertti Vakkari, Michael Völske, Martin Potthast, Matthias Hagen, and Benno Stein. Modeling the usefulness of search results as measured by information use. Information Processing & Management, (56)3:879–894, Elsevier BV, May 2019. [PUMA: imported] URL

Carsten Lutz, Quentin Manière, and Robin Nolte. Querying Circumscribed Description Logic Knowledge Bases. Proceedings of the 20th International Conference on Principles of Knowledge Representation and Reasoning, 482--491, August 2023. [PUMA: imported] URL

Mehdi Ali, Sahar Vahdati, Shruti Singh, Sourish Dasgupta, and Jens Lehmann. Improving Access to Science for Social Good. Machine Learning and Knowledge Discovery in Databases, 658–673, Springer International Publishing, 2020. [PUMA: imported] URL

Ana C. Lorena, Luís P. F. Garcia, Jens Lehmann, Marcilio C. P. Souto, and Tin Kam Ho. How Complex Is Your Classification Problem?: A Survey on Measuring Classification Complexity. ACM Computing Surveys, (52)5:1–34, Association for Computing Machinery (ACM), September 2019. [PUMA: imported] URL

Sebastian Volke, Dirk Zeckzer, Martin Middendorf, and Gerik Scheuermann. Visualizing Topological Properties of the Search Landscape of Combinatorial Optimization Problems. 69--85, April 2017. [PUMA: imported]

Narmin Laleh, Marta Ligero, Raquel Perez-Lopez, and Jakob Kather. Facts and Hopes on the Use of Artificial Intelligence for Predictive Immunotherapy Biomarkers in Cancer. Clinical Cancer Research, (29)September 2022. [PUMA: imported]

Mike Kestemont, Enrique Manjavacas, Ilia Markov, Janek Bevendorff, Matti Wiegmann, Efstathios Stamatatos, Martin Potthast, and Benno Stein. Overview of the Cross-Domain Authorship Verification Task at PAN 2020. September 2020. [PUMA: imported]

Robert Höhne et al Joachim Staib. In Leichtbaustrukturen zoomen Plattform: Unabhängige Visualisierungssoftware vom ILK. 2016. [PUMA: imported]

Stephan Kemper, André Petermann, and Martin Junghanns. Distributed FoodBroker: Skalierbare Generierung graphbasierter Geschäftsprozessdaten. Datenbanksysteme für Business, Technologie und Web (BTW 2017) - Workshopband, 105--110, Gesellschaft für Informatik e.V., Bonn, 2017. [PUMA: imported]

Anahy Santiago Arguello, Juan José Montellano-Ballesteros, and Peter F Stadler. Hamiltonicity in power graphs of a class of abelian groups. J. Algebraic Combin., (57)1:313--328, Springer Science and Business Media LLC, February 2023. [PUMA: imported]