Publications

Deborah Oliveros, Érika Roldán, Pablo Soberón, and Antonio J Torres. Tverberg Partition Graphs. 2023. [PUMA: Graphs Partition Tverberg Yaff]

Parvaneh Joharinad, and Jürgen Jost. The Laplace operator and the geometry of graphs. Mathematics of Data, 83--113, Springer International Publishing, Cham, 2023. [PUMA: Laplace geometry graphs nopdf operator]

Marvin Hofer, Daniel Obraczka, Alieh Saeedi, Hanna Köpcke, and Erhard Rahm. Construction of Knowledge Graphs: Current state and challenges. Information (Basel), (15)8:509, MDPI AG, August 2024. [PUMA: Graphs Knowledge Xack Yaff challenges]

Chengjin Xu, Fenglong Su, and Jens Lehmann. Time-aware Graph Neural Networks for Entity Alignment between Temporal Knowledge Graphs. 2022. [PUMA: Alignment Entity Graph Graphs Knowledge Networks Neural Temporal Time-aware Yaff] URL

Nicolas-Domenic Reiter, Andreas Gerhardus, Jonas Wahl, and Jakob Runge. Causal Inference on Process Graphs, Part I: The Structural Equation Process Representation. 2023. [PUMA: Causal Equation Graphs Inference Process Representation Structural Yaff] URL

Carmen Bruckmann, Peter F. Stadler, and Marc Hellmuth. From modular decomposition trees to rooted median graphs. Discrete Applied Mathematics, (310):1–9, Elsevier BV, March 2022. [PUMA: decomposition graphs median modular rooted trees zno] URL

Lisa Fiedler, Matthias Bernt, Martin Middendorf, and Peter F. Stadler. Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. BMC Bioinformatics, (24)1Springer Science and Business Media LLC, June 2023. [PUMA: Zno breakpoints de-Bruijn gene genome graphs noisy position-annotated] URL

Nico Domschke, Bruno Schmidt, Thomas Gatter, Richard Golnik, Paul Eisenhuth, Fabian Liessmann, Jens Meiler, and Peter F Stadler. Crossover Operators for Molecular Graphs with an Application to Virtual Drug Screening. American Chemical Society (ACS), September 2024. [PUMA: Crossover Drug Graphs Molecular Operators Screening Virtual Xack Yaff] URL

Tom Hartmann, Max Bannach, Martin Middendorf, Peter F. Stadler, Nicolas Wieseke, and Marc Hellmuth. Complete edge-colored permutation graphs. Advances in Applied Mathematics, (139):102377, Elsevier BV, August 2022. [PUMA: Zno edge-colored graphs permutation] URL

Ameera Vaheeda Shanavas, Manoj Changat, Marc Hellmuth, and Peter F. Stadler. Clusters and Unique Least Common Ancestors in Directed Acyclic Graphs. Research Square Platform LLC, March 2024. [PUMA: Acyclic Ancestors Common Directed Graphs Least Zno] URL

David Schaller, Manuela Geiß, Marc Hellmuth, and Peter F. Stadler. Best Match Graphs With Binary Trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics, (20)3:1679–1690, Institute of Electrical and Electronics Engineers (IEEE), May 2023. [PUMA: Best Binary Graphs Match Trees zno] URL

Carsten R. Seemann, Vincent Moulton, Peter F. Stadler, and Marc Hellmuth. Planar median graphs and cubesquare-graphs. Discrete Applied Mathematics, (331):38–58, Elsevier BV, May 2023. [PUMA: Planar cubesquare-graphs graphs median yaff] URL

Marc Hellmuth, Annachiara Korchmaros, José Antonio Ramírez-Rafael, Bruno Schmidt, Peter F. Stadler, and Sandhya Thekkumpadan Puthiyaveedu. Partial Fitch Graphs: Characterization, Satisfiability and Complexity. Cold Spring Harbor Laboratory, May 2024. [PUMA: Characterization Complexity Fitch Graphs Partial Satisfiability yaff] URL

Marcos E. González Laffitte, and Peter F. Stadler. Progressive Multiple Alignment of Graphs. Algorithms, (17)32024. [PUMA: Alignment Graphs Multiple Progressive Xack imported] URL