Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. Brief. Bioinform., (22)5Oxford University Press (OUP), September 2021. [PUMA: mapping WGBS whole sequencing genome benchmark; bisulfite DNA software; epigenetics; non-model plants; methylation;]
LazyB: fast and cheap genome assembly. Algorithms Mol. Biol., (16)1:8, Springer Science and Business Media LLC, June 2021. [PUMA: Unitigs tree; Nanopore Anchors; Illumina Genome assembly; Spanning sequencing;]
A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae). Gigascience, (9)1Oxford University Press (OUP), January 2020. [PUMA: genome comparison hawkmoth-silk gene annotation; moth topic_lifescience reads; long assembly; PacBio]
Tracing the evolution of the heterotrimeric G protein $\alpha$ subunit in Metazoa. BMC Evol. Biol., (18)1:51, April 2018. [PUMA: Heterotrimeric annotation; G Evolution; Whole duplication Orthology; genome receptors; protein; protein topic_lifescience Paralog; coupled Genome]