A time-resolved meta-analysis of consensus gene expression profiles during human T-cell activation. Genome Biology, (24)1Springer Science and Business Media LLC, December 2023. [PUMA: consensus gene T-cell expression human Yaff meta-analysis activation] URL
Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. New Phytol., (240)2:770--783, Wiley, October 2023. [PUMA: gliding biofilm; gene horizontal topic_lifescience motility; bioadhesion; unit_transfer diatom;]
Netrank: network-based approach for biomarker discovery. BMC bioinformatics, (24)1BioMed Central, London, Jul 29, 2023. [PUMA: FIS_scads Disease Research, Curve, Progression, Humans, Area Gene Under topic_lifescience Algorithms, Library Biomedical]
Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation. New Phytologist, (240)2:770--783, Wiley-Blackwell, Oxford u. a., Aug 7, 2023. [PUMA: FIS_scads Transfer, Adhesives/metabolism, Horizontal, Gene Diatoms/metabolism, topic_lifescience Bacteria Biofilms,]
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. BMC Bioinformatics, (24)1Springer Science and Business Media LLC, June 2023. [PUMA: genome graphs de-Bruijn gene breakpoints Zno position-annotated noisy] URL
Transcriptomic signatures reveal a shift towards an anti-inflammatory gene expression profile but also the induction of type I and type II interferon signaling networks through aryl hydrocarbon receptor activation in murine macrophages. Frontiers in Immunology, (14)Frontiers Media SA, May 2023. [PUMA: signaling through gene profile expression hydrocarbon networks aryl interferon signatures induction murine receptor anti-inflammatory Zno macrophages Transcriptomic activation] URL
AsymmeTree: A Flexible Python Package for the Simulation of Complex Gene Family Histories. Software, (1)3:276–298, MDPI AG, August 2022. [PUMA: Gene Simulation Package Python Histories zno AsymmeTree Family] URL
Artificial intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology. J. Hepatol., (77)1:116--127, Elsevier BV, July 2022. [PUMA: image artificial immune intelligence; pathology; gene deep learning; signatures; slide topic_lifescience whole]
SetQuence & SetOmic: Deep Set Transformer-based Representations of Cancer Multi-Omics. 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2022, 139--147, IEEE, New York u. a., United States of America, 2022. [PUMA: FIS_scads Set processing, gene expression, natural language molecular livinglab genome, Deep sequence topic_federatedlearn multi-omics, mutome, Representations analysis, Network, Neural]
Transcriptomic research in heart failure with preserved ejection fraction: Current state and future perspectives. Card. Fail. Rev., (6):e24, Radcliffe Group Ltd, March 2020. [PUMA: Heart gene peripheral transcriptome blood with fraction; RNA; expression; LIFE-Heart; failure ejection cells; preserved mononuclear]
A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae). Gigascience, (9)1Oxford University Press (OUP), January 2020. [PUMA: genome comparison hawkmoth-silk gene annotation; moth topic_lifescience reads; long assembly; PacBio]
Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem. J. Math. Biol., (77)2:313--341, August 2018. [PUMA: problems; gene over Kalmanson metrics; Non-homologous Phylogenetic crossing combinatorics; path Unequal recombination; of Evolution Hamiltonian clusters;]