Publications

Lisa Fiedler, Matthias Bernt, Martin Middendorf, and Peter F. Stadler. Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. BMC Bioinformatics, (24)1Springer Science and Business Media LLC, June 2023. [PUMA: Zno breakpoints de-Bruijn gene genome graphs noisy position-annotated] URL

David Schaller, Marc Hellmuth, and Peter F. Stadler. AsymmeTree: A Flexible Python Package for the Simulation of Complex Gene Family Histories. Software, (1)3:276–298, MDPI AG, August 2022. [PUMA: AsymmeTree Family Gene Histories Package Python Simulation zno] URL

Johannes R. Schmidt, Janine Haupt, Sina Riemschneider, Christoph Kämpf, Dennis Löffler, Conny Blumert, Kristin Reiche, Ulrike Koehl, Stefan Kalkhof, and Jörg Lehmann. Transcriptomic signatures reveal a shift towards an anti-inflammatory gene expression profile but also the induction of type I and type II interferon signaling networks through aryl hydrocarbon receptor activation in murine macrophages. Frontiers in Immunology, (14)Frontiers Media SA, May 2023. [PUMA: Transcriptomic Zno activation anti-inflammatory aryl expression gene hydrocarbon induction interferon macrophages murine networks profile receptor signaling signatures through] URL