Publications

Melissa Sanabria, Jonas Hirsch, and Anna R Poetsch. The human genome's vocabulary as proposed by the DNA language model GROVER. bioRxiv, July 2023. [PUMA: DNA GROVER language model xack]

Mateusz Susik, and Ivo F. Sbalzarini. Analysis of the Hamiltonian Monte Carlo genotyping algorithm on PROVEDIt mixtures including a novel precision benchmark. Forensic Science International: Genetics, (64):102840, 2023. [PUMA: DNA HMC Probabilistic Validation, genotyping, mixtures, topic_lifescience zno] URL

Adam Nunn, Christian Otto, Peter F Stadler, and David Langenberger. Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis. Brief. Bioinform., (22)5Oxford University Press (OUP), September 2021. [PUMA: DNA WGBS benchmark bisulfite epigenetics genome mapping methylation non-model plants sequencing software whole zno]