Publications

Dimitra Kiakou, Adam Adamopoulos, and Nico Scherf. Graph-Based Disease Prediction in Neuroimaging: Investigating the Impact of Feature Selection. Worldwide Congress on “Genetics, Geriatrics and Neurodegenerative Diseases Research", 223--230, 2022. [PUMA: Disease Feature Graph-Based Impact Investigating Neuroimaging Prediction Selection learning]

Anika Hannemann, Jan Ewald, Leo Seeger, and Erik Buchmann. Federated Learning on Transcriptomic Data: Model Quality and Performance Trade-Offs. Computational Science – ICCS 2024: 24th International Conference, Malaga, Spain, July 2–4, 2024, Proceedings, Part IV, 279–293, Springer-Verlag, Berlin, Heidelberg, 2024. [PUMA: Cell Classification, Disease Federated Learning, Prognosis Type] URL

Vincent D. Friedrich, Peter Pennitz, Emanuel Wyler, Julia M. Adler, Dylan Postmus, Kristina Müller, Luiz Gustavo Teixeira Alves, Julia Prigann, Fabian Pott, Daria Vladimirova, Thomas Hoefler, Cengiz Goekeri, Markus Landthaler, Christine Goffinet, Antoine-Emmanuel Saliba, Markus Scholz, Martin Witzenrath, Jakob Trimpert, Holger Kirsten, and Geraldine Nouailles. Neural network-assisted humanisation of COVID-19 hamster transcriptomic data reveals matching severity states in human disease. eBioMedicine, (108):105312, 2024. [PUMA: COVID-19, Cross-species Deep Disease Hamster RNA-seq, Single-cell analysis, learning matching, model, state] URL

Souhrid Mukherjee, Thomas A. Cassini, Ningning Hu, Tao Yang, Bian Li, Wangzhen Shen, Christopher W. Moth, David C. Rinker, Jonathan H. Sheehan, Joy D. Cogan, John H. Newman, Rizwan Hamid, Robert L. Macdonald, Dan M. Roden, Jens Meiler, Georg Kuenze, John A. Phillips, and John A. Capra. Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by de novo KCNC2 variants. Human Genetics and Genomics Advances, (3)4:100131, 2022. [PUMA: DEE, Diseases KCNC2, Network, Undiagnosed and biology, developmental disease dynamics electrophysiology, encephalopathy, epileptic interpretation, molecular personalized rare simulations, structural variant variant,] URL

Souhrid Mukherjee, Joy D Cogan, John H Newman, John A Phillips, 3rd, Rizwan Hamid, Undiagnosed Diseases Network, Jens Meiler, and John A Capra. Identifying digenic disease genes via machine learning in the Undiagnosed Diseases Network. Am. J. Hum. Genet., (108)10:1946--1963, Elsevier BV, October 2021. [PUMA: Diseases Network; UDN; Undiagnosed clinical digenic disease disease; learning; machine oligogenic prediction; rare topic_lifescience]