Publications

David Nam, Julius Chapiro, Valerie Paradis, Tobias Paul Seraphin, and Jakob Nikolas Kather. Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction. JHEP Rep., (4)4:100443, Elsevier BV, April 2022. [PUMA: a disease; HCC, or intelligence; liver multivariable non-alcoholic multimodal ML, artificial WSIs, images; prediction support integration TACE, DICOM, AI, network; deep neural Digital Diagnosis; MVI, transarterial fatty topic_lifescience microvascular convolutional in learning; imaging; Communications invasion; NAFLD, chemoembolisation; hepatocellular Reporting steatohepatitis; Transparent Individual slide machine Prognosis Artificial data for NASH, whole Medicine; TRIPOD, of CNN, and Imaging carcinoma; diagnostic system; model]

Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, Ming Y Lu, Christian Trautwein, Rupert Langer, Bastian Dislich, Roman D Buelow, Heike Irmgard Grabsch, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Titus J Brinker, Firas Khader, Daniel Truhn, Nadine T Gaisa, Peter Boor, Michael Hoffmeister, Volkmar Schulz, and Jakob Nikolas Kather. Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology. Med. Image Anal., (79)102474:102474, Elsevier BV, July 2022. [PUMA: Convolutional Artificial intelligence; Multiple-Instance deep neural networks; learning Weakly-supervised Learning; transformers; pathology; topic_lifescience Vision Computational]

Maksim Kukushkin, Martin Bogdan, and Thomas Schmid. BiCAE -- A Bimodal Convolutional Autoencoder for Seed Purity Testing. In Albert Bifet, Tomas Krilavicius, Ioanna Miliou, and Slawomir Nowaczyk (Eds.), Machine Learning and Knowledge Discovery in Databases. Applied Data Science Track, 447--462, Springer Nature Switzerland, Cham, 2024. [PUMA: Convolutional Testing Autoencoder Seed Purity Bimodal Zno BiCAE]

Johannes Gerritzen, Andreas Hornig, Peter Winkler, and Maik Gude. Direct parameter identification for highly nonlinear strain rate dependent constitutive models using machine learning. ECCM21 - Proceedings of the 21st European Conference on Composite Materials, (3):1252--1259, European Society for Composite Materials (ESCM), Jul 2, 2024. [PUMA: Convolutional FIS_scads Fiber area_architectures neural plastics rate dependency, reinforced Direct Strain Machine learning, networks, identification, parameter topic_engineering] URL

Mariia Tkachenko, Claire Chalopin, Boris Jansen-Winkeln, Thomas Neumuth, Ines Gockel, and Marianne Maktabi. Impact of pre- and post-processing steps for supervised classification of colorectal cancer in hyperspectral images. Cancers (Basel), (15)7April 2023. [PUMA: convolutional learning; cancer networks; imaging; classification; pre-processing post-processing; cancer; filter; colorectal median machine hyperspectral topic_lifescience]

Lucas Schneider, Sara Laiouar-Pedari, Sara Kuntz, Eva Krieghoff-Henning, Achim Hekler, Jakob N Kather, Timo Gaiser, Stefan Fröhling, and Titus J Brinker. Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review. Eur. J. Cancer, (160):80--91, Elsevier BV, January 2022. [PUMA: Convolutional Biomarker Multimodal neural networks; Omics identification; topic_lifescience Cancer; fusion;]

Aris Marcolongo, Mykhailo Vladymyrov, Sebastian Lienert, Nadav Peleg, Sigve Haug, and Jakob Zscheischler. Predicting years with extremely low gross primary production from daily weather data using Convolutional Neural Networks. Environmental Data Science, (1):e2, 2022. [PUMA: Convolutional Networks Predicting low gross production data primary Neural weather]

Veronika Scholz, Peter Winkler, Andreas Hornig, Maik Gude, and Angelos Filippatos. Structural damage identification of composite rotors based on fully connected neural networks and convolutional neural networks. Sensors (Basel), (21)6:2005, MDPI AG, March 2021. [PUMA: convolutional (SHM) monitoring learning; neural networks; rotors; health dense composites; connected structural composite machine fully]