Publications

Robert Haase, Christian Tischer, Peter Bankhead, Kota Miura, and Beth A Cimini. A Call for FAIR and Open-Access Training Materials to advance Bioimage Analysis. 2024. [PUMA: xack]

Beth A Cimini, Peter Bankhead, Rocco d'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L Jones, Florian Jug, and others. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science, (137)20The Company of Biologists, 2024. [PUMA: xack]

Robert Haase, Christian Tischer, Jean-Karim Hériché, and Nico Scherf. Benchmarking Large Language Models for Bio-Image Analysis Code Generation. bioRxiv, 2024--04, Cold Spring Harbor Laboratory, 2024. [PUMA: xack]

Ringo Baumann, Matti Berthold, Dov M. Gabbay, and Odinaldo Rodrigues. Forgetting in Abstract Argumentation: Limits and Possibilities. Journal of Artificial Intelligence Research, (82)2025. [PUMA: abstract_argumentation argumentation forgetting topic_knowledge xack yaff] URL

Matti Berthold. On Syntactic Forgetting with relativized Strong Persistence. In Nina Gierasimczuk, and Jesse Heyninck (Eds.), Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning (NMR 2024) co-located with 21st International Conference on Principles of Knowledge Representation and Reasoning (KR 2024), Hanoi, Vietnam, November 2-4, 2024, (3835):173--182, CEUR-WS.org, 2024. [PUMA: answer_set_programming forgetting logic_programming topic_knowledge xack yaff] URL

Josefine Umlauft, Christopher W Johnson, Philippe Roux, Daniel Taylor Trugman, Albanne Lecointre, Andrea Walpersdorf, Ugo Nanni, Florent Gimbert, Bertrand Rouet-Leduc, Claudia Hulbert, and others. Mapping glacier basal sliding with machine learning. EarthArXiv, 2023. [PUMA: xack]

Johanna Zitt, Patrick Paitz, Fabian Walter, and Josefine Umlauft. Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data. Authorea Preprints, Authorea, 2024. [PUMA: xack]

Lukas Gienapp, Niklas Deckers, Martin Potthast, and Harrisen Scells. Learning Effective Representations for Retrieval Using Self-Distillation with Adaptive Relevance Margins. CoRR, (abs/2407.21515)August 2024. [PUMA: xack yaff] URL

Michał Patryk Miazga, Daniel Abitz, Matthias Täschner, and Erhard Rahm. Automated Configuration of Schema Matching Tools: A Reinforcement Learning Approach. Datenbanksysteme für Business, Technologie und Web (BTW 2025), 331--354, Gesellschaft für Informatik, Bonn, 2025. [PUMA: topic_lifescience xack yaff]

Daniel Mederer, Hannes Feilhauer, Eya Cherif, Katja Berger, Tobias B. Hank, Kyle R. Kovach, Phuong D. Dao, Bing Lu, Philip A. Townsend, and Teja Kattenborn. Plant trait retrieval from hyperspectral data: Collective efforts in scientific data curation outperform simulated data derived from the PROSAIL model. ISPRS Open Journal of Photogrammetry and Remote Sensing, 100080, Elsevier BV, December 2024. [PUMA: topic_earthenvironment xack yaff] URL

Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus Voehler, Anja Penk, Jens Meiler, and Clara T. Schoeder. Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal of Structural Biology, (217)1:108180, 2025. [PUMA: topic_lifescience xack yaff] URL

Anderson Faustino da Silva, Jeronimo Castrillon, and Fernando Magno Quint\ ao Pereira. A Comparative Study on the Accuracy and the Speed of Static and Dynamic Program Classifiers. In IEEE (Eds.), Proceedings of the 34th ACM SIGPLAN International Conference on Compiler Construction (CC 2025), Association for Computing Machinery, New York, NY, USA, March 2025. [PUMA: xack yaff]

Christopher Rost, Riccardo Tommasini, Angela Bonifati, Emanuele Della Valle, Erhard Rahm, Keith W Hare, Stefan Plantikow, Petra Selmer, and Hannes Voigt. Seraph: Continuous Queries on Property Graph Streams.. EDBT, 234--247, 2024. [PUMA: area_bigdata topic_graph xack yaff]

Miriam Louise Carnot, Eric Peukert, and Bogdan Franczyk. Enhancing Roadway Safety: LIDAR-based Tree Clearance Analysis. CoRR, (abs/2402.18309)2024. [PUMA: area_bigdata xack yaff] URL

Vincent D Friedrich, Peter Pennitz, Emanuel Wyler, Julia M Adler, Dylan Postmus, Luiz Gustavo Teixeira Alves, Julia Prigann, Fabian Pott, Daria Vladimirova, Thomas Hoefler, Cengiz Goekeri, Markus Landthaler, Christine Goffinet, Antoine-Emmanuel Saliba, Markus Scholz, Martin Witzenrath, Jakob Trimpert, Holger Kirsten, and Geraldine Nouailles. Neural Network-Assisted Humanization of COVID-19 Hamster scRNAseq Data Reveals Matching Severity States in Human Disease. Cold Spring Harbor Laboratory, January 2024. [PUMA: Data HCOVID-19 Severity States scRNAseq xack yaff] URL

Bowen Song, Chengjin Xu, Kossi Amouzouvi, Maocai Wang, Jens Lehmann, and Sahar Vahdati. Distinct Geometrical Representations for Temporal and Relational Structures in Knowledge Graphs. In Danai Koutra, Claudia Plant, Manuel Gomez Rodriguez, Elena Baralis, and Francesco Bonchi (Eds.), Machine Learning and Knowledge Discovery in Databases: Research Track - European Conference, ECML PKDD 2023, Turin, Italy, September 18-22, 2023, Proceedings, Part III, (14171):601--616, Springer, 2023. [PUMA: Distinct Geometrical Relational Representations Structures Temporal xack] URL

Alexander Brauckmann, Anderson Faustino da Silva, Jeronimo Castrillon, and Hugh Leather. DFA-Net: A Compiler-Specific Neural Architecture for Robust Generalization in Data Flow Analyses. In IEEE (Eds.), Proceedings of the 34th ACM SIGPLAN International Conference on Compiler Construction (CC 2025), Association for Computing Machinery, New York, NY, USA, March 2025. [PUMA: NN compiler data-flow xack]

João Paulo C. de Lima, Benjamin F. Morris III, Asif Ali Khan, Jeronimo Castrillon, and Alex K. Jones. Count2Multiply: Reliable In-memory High-Radix Counting. In arxiv (Eds.), 1-14, Arxiv, September 2024. [PUMA: LLM accelerator computing-in-memory xack yaff] URL

David Montero, Miguel D Mahecha, César Aybar, Clemens Mosig, and Sebastian Wieneke. Facilitating advanced Sentinel-2 analysis through a simplified computation of Nadir BRDF Adjusted Reflectance. arXiv preprint arXiv:2404.15812, 2024. [PUMA: xack]

Eya Cherif, Hannes Feilhauer, Katja Berger, Michael Ewald, Tobias B Hank, Kyle R Kovach, Philip A Townsend, Zhihui Wang, and Teja Kattenborn. From spectra to functional plant traits: Transferable multi-trait models from heterogeneous and sparse data. EGU General Assembly Conference Abstracts, EGU-10901, 2023. [PUMA: xack]