Publications

Arthur Fleig, Florian Fischer, Markus Klar, Patrick Ebel, Miroslav Bachinski, Per Ola Kristensson, Roderick Murray-Smith, and Antti Oulasvirta. Mind & Motion: Opportunities and Applications of Integrating Biomechanics and Cognitive Models in HCI. In Andrea Bianchi, Elena Glassman, Wendy E. Mackay, Shengdong Zhao, Jeeeun Kim, and Ian Oakley (Eds.), Adjunct Proceedings of the 38th Annual ACM Symposium on User Interface Software and Technology, Association for Computing Machinery, New York, NY, USA, 2025. [PUMA: Biomechanical Cognitive Human-Computer Interaction Modeling Simulation User Workshop myown yaff] URL

Yexin Yan, Stefan Hillmich, Robert Wille, and Christian Mayr. Node Replacement based Approximate Quantum Simulation with Decision Diagrams. CoRR, (abs/2507.04335)2025. [PUMA: diagrams simulation xackquantum yaff] URL

Patrick Stiller, Varun Makdani, Franz Pöschel, Richard Pausch, Alexander Debus, Michael Bussmann, and Nico Hoffmann. Continual learning autoencoder training for a particle-in-cell simulation via streaming. 2022. [PUMA: Continual autoencoder imported learning particle-in-cell simulation training zno] URL

David Schaller, Marc Hellmuth, and Peter F. Stadler. AsymmeTree: A Flexible Python Package for the Simulation of Complex Gene Family Histories. Software, (1)3:276–298, MDPI AG, August 2022. [PUMA: AsymmeTree Family Gene Histories Package Python Simulation zno] URL

Karen G. Soans, Ana Patricia Ramos, Jaydeep Sidhaye, Abhijeet Krishna, Anastasia Solomatina, Karl B. Hoffmann, Raimund Schl��ler, Jochen Guck, Ivo F. Sbalzarini, Carl D. Modes, and Caren Norden. Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology. Current Biology, (32)22:4817--4831.e9, 2022. [PUMA: cell collective cup, matrix migration, optic simulation topic_lifescience topology topology, zebrafish, zno] URL

Johannes Pahlke, and Ivo Sbalzarini. Proven Distributed Memory Parallelization of Particle Methods. ACM Trans. Parallel Comput., Association for Computing Machinery, New York, NY, USA, Sep 18, 2024. [PUMA: algorithmics, algorithms, bounds, definition, distributed engineering formal memory, meshfree methods, parallelization, particle scalability simulation software topic_lifescience zno] URL

Katja Hoffmann, Katja Cazemier, Christoph Baldow, Silvio Schuster, Yuri Kheifetz, Sibylle Schirm, Matthias Horn, Thomas Ernst, Constanze Volgmann, Christian Thiede, Andreas Hochhaus, Martin Bornhäuser, Meinolf Suttorp, Markus Scholz, Ingmar Glauche, Markus Loeffler, and Ingo Roeder. Integration of mathematical model predictions into routine workflows to support clinical decision making in haematology. BMC Med. Inform. Decis. Mak., (20)1:28, February 2020. [PUMA: Clinical Computer Haematology Individual Mathematical Model-based Routine Support decision-making management modelling optimization planning simulation system therapy treatment workflow zno data]