Publications

V Janett Olzog, Christiane Gärtner, Peter F Stadler, Jörg Fallmann, and Christina E Weinberg. cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends. RNA Biol., (18)sup2:818--831, Informa UK Limited, November 2021. [PUMA: (RppH); 5ʹ-3ʹ KQ; RNA RtcB T4 Xrn1; exonuclease ligase ligase; next-generation pyrophosphohydrolase sequencing truncated]

Ronny Lorenz, and Peter F Stadler. RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, December 2020. [PUMA: RNA algorithm elements; hyper-stable prediction; scanning secondary structure]

Ali Al-Fatlawi, Eka Rusadze, Alexander Shmelkin, Negin Malekian, Cigdem Ozen, Christian Pilarsky, and Michael Schroeder. Netrank: network-based approach for biomarker discovery. BMC Bioinformatics, (24)1:304, July 2023. [PUMA: Biomarker; Cancer; Gene Protein R RNA expression; networks; package;]