Deutsches Netzwerk für Bioinformatik Infrastruktur, de. NBI, RNA Bioinformatics Center-Leipzig. Professur für Bioinformatik, Institut für Informatik, Universität Leipzig, 2022. [PUMA: Bioinformatics Bioinformatik Center-Leipzig Deutsches Infrastruktur Netzwerk RNA]
BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification. RNA Biology, (21)1:410–421, Informa UK Limited, March 2024. [PUMA: BioDeepfuse RNA classification deep extraction feature learning non-coding] URL
Accuracy of RNA Structure Prediction Depends on the Pseudoknot Grammar. Advances in Bioinformatics and Computational Biology, 20–31, Springer Nature Switzerland, 2022. [PUMA: DependsPseudoknot Grammar Prediction RNA Structure] URL
A Relation between Natural Selection and Computational Complexity. October 2024. [PUMA: Biological Complexity Computation Computational Developmental Folding Genotype-Phenotype Map Program RNA] URL
Assessing the Quality of Cotranscriptional Folding Simulations. RNA Folding, 347–376, Springer US, February 2012. [PUMA: BarMap BarMap-QA Cotranscriptional_folding Docker Kinetics_simulation Quality_assurance RNA Secondary_structure] URL
cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2',3' cyclic phosphates and 5' hydroxyl ends. RNA Biol., (18)sup2:818--831, Informa UK Limited, November 2021. [PUMA: (RppH); 5ʹ-3ʹ KQ; RNA RtcB T4 Xrn1; exonuclease ligase ligase; next-generation pyrophosphohydrolase sequencing truncated]
RNA secondary structures with limited base pair span: Exact backtracking and an application. Genes (Basel), (12)1:14, MDPI AG, December 2020. [PUMA: RNA algorithm elements; hyper-stable prediction; scanning secondary structure]