Publications

Ariel Iporre-Rivas, Dorothee Saur, Karl Rohr, Gerik Scheuermann, and Christina Gillmann. Stroke-GFCN: ischemic stroke lesion prediction with a fully convolutional graph network. J. Med. Imaging (Bellingham), (10)4:044502, SPIE-Intl Soc Optical Eng, July 2023. [PUMA: graph imaging; learning; machine medical multi-modal networks; neural prediction stroke]

Marie Steinacker, Yuri Kheifetz, and Markus Scholz. Individual modelling of haematotoxicity with NARX neural networks: A knowledge transfer approach. Heliyon, (9)7:e17890, Elsevier BV, July 2023. [PUMA: Haematopoiesis; Precision Recurrent System Transfer identification; learning medicine; networks; neural unit_transfer]

David Nam, Julius Chapiro, Valerie Paradis, Tobias Paul Seraphin, and Jakob Nikolas Kather. Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction. JHEP Rep., (4)4:100443, Elsevier BV, April 2022. [PUMA: AI, Artificial CNN, Communications DICOM, Diagnosis; Digital HCC, Imaging Individual ML, MVI, Medicine; NAFLD, NASH, Prognosis Reporting TACE, TRIPOD, Transparent WSIs, a and artificial carcinoma; chemoembolisation; convolutional data deep diagnostic disease; fatty for hepatocellular images; imaging; in integration intelligence; invasion; learning; liver machine microvascular model multimodal multivariable network; neural non-alcoholic of or prediction slide steatohepatitis; support system; transarterial whole]

Bian Li, Jeffrey Mendenhall, John A Capra, and Jens Meiler. A multitask deep-learning method for predicting membrane associations and secondary structures of proteins. J. Proteome Res., (20)8:4089--4100, American Chemical Society (ACS), August 2021. [PUMA: convolutional deep learning; long memory multitask networks; neural prediction prediction; secondary short-term structure topic_lifescience topology transmembrane]

Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, Ming Y Lu, Christian Trautwein, Rupert Langer, Bastian Dislich, Roman D Buelow, Heike Irmgard Grabsch, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Titus J Brinker, Firas Khader, Daniel Truhn, Nadine T Gaisa, Peter Boor, Michael Hoffmeister, Volkmar Schulz, and Jakob Nikolas Kather. Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology. Med. Image Anal., (79)102474:102474, Elsevier BV, July 2022. [PUMA: Artificial Computational Convolutional Learning; Multiple-Instance Vision Weakly-supervised deep intelligence; learning networks; neural pathology; transformers;]

Lucas Schneider, Sara Laiouar-Pedari, Sara Kuntz, Eva Krieghoff-Henning, Achim Hekler, Jakob N Kather, Timo Gaiser, Stefan Fröhling, and Titus J Brinker. Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review. Eur. J. Cancer, (160):80--91, Elsevier BV, January 2022. [PUMA: Biomarker Cancer; Convolutional Multimodal Omics fusion; identification; networks; neural topic_lifescience]

Benjamin P Brown, Oanh Vu, Alexander R Geanes, Sandeepkumar Kothiwale, Mariusz Butkiewicz, Edward W Lowe, Jr, Ralf Mueller, Richard Pape, Jeffrey Mendenhall, and Jens Meiler. Introduction to the BioChemical Library (BCL): An application-based open-source toolkit for integrated cheminformatics and machine learning in computer-aided drug discovery. Front. Pharmacol., (13):833099, Frontiers Media SA, February 2022. [PUMA: BCL; QSAR; biochemical cheminformatics; deep design; discovery; drug library; network; neural open-source topic_lifescience]

Veronika Scholz, Peter Winkler, Andreas Hornig, Maik Gude, and Angelos Filippatos. Structural damage identification of composite rotors based on fully connected neural networks and convolutional neural networks. Sensors (Basel), (21)6:2005, MDPI AG, March 2021. [PUMA: (SHM) composite composites; connected convolutional dense fully health learning; machine monitoring networks; neural rotors; structural]

Timo P. Gros, David Groß, Stefan Gumhold, Jörg Hoffmann, Michaela Klauck, and Marcel Steinmetz. TraceVis: Towards Visualization for Deep Statistical Model Checking. Leveraging Applications of Formal Methods, Verification and Validation: Tools and Trends: 9th International Symposium on Leveraging Applications of Formal Methods, ISoLA 2020, Rhodes, Greece, October 20–30, 2020, Proceedings, Part IV, 27–46, Springer-Verlag, Berlin, Heidelberg, 2020. [PUMA: Checking Model Networks Neural Statistical Visualization] URL

Nishant Kumar, Lukas Krause, Thomas Wondrak, Sven Eckert, Kerstin Eckert, and Stefan Gumhold. Robust Reconstruction of the Void Fraction from Noisy Magnetic Flux Density Using Invertible Neural Networks. Sensors, (24)42024. [PUMA: Density Flux Fraction Invertible Magnetic Networks Neural Noisy Reconstruction Void] URL