Publications

Anderson P. Avila Santos, Breno L. S. de Almeida, Robson P. Bonidia, Peter F. Stadler, Polonca Stefanic, Ines Mandic-Mulec, Ulisses Rocha, Danilo S. Sanches, und André C.P.L.F. de Carvalho. BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification. RNA Biology, (21)1:410–421, Informa UK Limited, März 2024. [PUMA: BioDeepfuse RNA classification deep extraction feature learning non-coding zno] URL

Jordan Richards, Raphaël Huser, Emanuele Bevacqua, und Jakob Zscheischler. Insights into the Drivers and Spatiotemporal Trends of Extreme Mediterranean Wildfires with Statistical Deep Learning. Artificial Intelligence for the Earth Systems, (2)4American Meteorological Society, Oktober 2023. [PUMA: Extreme Mediterranean Spatiotemporal Statistical Trends Wildfires zno learning deep] URL

Ali Al-Fatlawi, Negin Malekian, Sebastián Garc\'ıa, Andreas Henschel, Ilwook Kim, Andreas Dahl, Beatrix Jahnke, Peter Bailey, Sarah Naomi Bolz, Anna R Poetsch, Sandra Mahler, Robert Grützmann, Christian Pilarsky, und Michael Schroeder. Deep learning improves pancreatic cancer diagnosis using RNA-based variants. Cancers (Basel), (13)11:2654, MDPI AG, Mai 2021. [PUMA: association cancer chronic deep learning pancreatic pancreatitis study topic_lifescience transcriptome-wide zno]

David Nam, Julius Chapiro, Valerie Paradis, Tobias Paul Seraphin, und Jakob Nikolas Kather. Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction. JHEP Rep., (4)4:100443, Elsevier BV, April 2022. [PUMA: AI CNN Communications DICOM Diagnosis Digital HCC Imaging Individual ML MVI Medicine NAFLD NASH Prognosis Reporting TACE TRIPOD Transparent WSIs a and artificial carcinoma chemoembolisation convolutional data deep diagnostic disease fatty for hepatocellular images imaging in integration intelligence invasion learning liver machine microvascular model multimodal multivariable network neural non-alcoholic of or prediction slide steatohepatitis support system topic_lifescience transarterial whole zno]

Chiara Maria Lavinia Loeffler, Nadina Ortiz Bruechle, Max Jung, Lancelot Seillier, Michael Rose, Narmin Ghaffari Laleh, Ruth Knuechel, Titus J Brinker, Christian Trautwein, Nadine T Gaisa, und Jakob N Kather. Artificial intelligence-based detection of FGFR3 mutational status directly from routine histology in bladder cancer: A possible preselection for molecular testing?. Eur. Urol. Focus, (8)2:472--479, Elsevier BV, März 2022. [PUMA: Bladder FGFR3 Molecular cancer factor fibroblast for growth intelligence learning mutations receptor testing therapy topic_lifescience zno artificial deep]

Lorenzo Maiello, Lorenzo Ball, Marco Micali, Francesca Iannuzzi, Nico Scherf, Ralf-Thorsten Hoffmann, Marcelo Gama de Abreu, Paolo Pelosi, und Robert Huhle. Automatic lung segmentation and quantification of aeration in computed tomography of the chest using 3D transfer learning. Front. Physiol., (12):725865, 2021. [PUMA: ARDS COVID-19 Jaccard deep index learning lung recruitment segmentation transfer uNet zno]

Roman C Maron, Achim Hekler, Sarah Haggenmüller, Christof von Kalle, Jochen S Utikal, Verena Müller, Maria Gaiser, Friedegund Meier, Sarah Hobelsberger, Frank F Gellrich, Mildred Sergon, Axel Hauschild, Lars E French, Lucie Heinzerling, Justin G Schlager, Kamran Ghoreschi, Max Schlaak, Franz J Hilke, Gabriela Poch, Sören Korsing, Carola Berking, Markus V Heppt, Michael Erdmann, Sebastian Haferkamp, Dirk Schadendorf, Wiebke Sondermann, Matthias Goebeler, Bastian Schilling, Jakob N Kather, Stefan Fröhling, Daniel B Lipka, Eva Krieghoff-Henning, und Titus J Brinker. Model soups improve performance of dermoscopic skin cancer classifiers. Eur. J. Cancer, (173):307--316, Elsevier BV, September 2022. [PUMA: Calibration Dermatology Ensembles Generalisation Melanoma Model Nevus Robustness intelligence learning soups topic_lifescience zno artificial deep]

Scarlet Brockmoeller, Amelie Echle, Narmin Ghaffari Laleh, Susanne Eiholm, Marie Louise Malmstrøm, Tine Plato Kuhlmann, Katarina Levic, Heike Irmgard Grabsch, Nicholas P West, Oliver Lester Saldanha, Katerina Kouvidi, Aurora Bono, Lara R Heij, Titus J Brinker, Ismayil Gögenür, Philip Quirke, und Jakob Nikolas Kather. Deep learning identifies inflamed fat as a risk factor for lymph node metastasis in early colorectal cancer. J. Pathol., (256)3:269--281, Wiley, März 2022. [PUMA: AI; LNM adipose and artificial bowel colorectal deep digital early inflamed metastasis; new pT1 pT2 prediction predictive tissue; topic_lifescience zno learning intelligence pathology biomarker cancer]

Peter Leonard Schrammen, Narmin Ghaffari Laleh, Amelie Echle, Daniel Truhn, Volkmar Schulz, Titus J Brinker, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Alexander Brobeil, Matthias Kloor, Lara R Heij, Dirk Jäger, Christian Trautwein, Heike I Grabsch, Philip Quirke, Nicholas P West, Michael Hoffmeister, und Jakob Nikolas Kather. Weakly supervised annotation-free cancer detection and prediction of genotype in routine histopathology. J. Pathol., (256)1:50--60, Wiley, Januar 2022. [PUMA: Lynch artificial colorectal computational deep digital instability microsatellite syndrome; topic_lifescience zno learning intelligence pathology cancer]

Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, Ming Y Lu, Christian Trautwein, Rupert Langer, Bastian Dislich, Roman D Buelow, Heike Irmgard Grabsch, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Titus J Brinker, Firas Khader, Daniel Truhn, Nadine T Gaisa, Peter Boor, Michael Hoffmeister, Volkmar Schulz, und Jakob Nikolas Kather. Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology. Med. Image Anal., (79)102474:102474, Elsevier BV, Juli 2022. [PUMA: Computational Convolutional Learning; Multiple-Instance Vision Weakly-supervised deep learning neural topic_lifescience transformers; zno artificial intelligence pathology networks]

Qinghe Zeng, Christophe Klein, Stefano Caruso, Pascale Maille, Narmin Ghaffari Laleh, Daniele Sommacale, Alexis Laurent, Giuliana Amaddeo, David Gentien, Audrey Rapinat, Hélène Regnault, Cécile Charpy, Cong Trung Nguyen, Christophe Tournigand, Raffaele Brustia, Jean Michel Pawlotsky, Jakob Nikolas Kather, Maria Chiara Maiuri, Nicolas Loménie, und Julien Calderaro. Artificial intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology. J. Hepatol., (77)1:116--127, Elsevier BV, Juli 2022. [PUMA: artificial deep gene image immune signatures; slide topic_lifescience whole zno learning intelligence pathology]

Chiara Maria Lavinia Loeffler, Nadine T Gaisa, Hannah Sophie Muti, Marko van Treeck, Amelie Echle, Narmin Ghaffari Laleh, Christian Trautwein, Lara R Heij, Heike I Grabsch, Nadina Ortiz Bruechle, und Jakob Nikolas Kather. Predicting mutational status of driver and suppressor genes directly from histopathology with Deep Learning: A systematic study across 23 solid tumor types. Front. Genet., (12):806386, 2021. [PUMA: (AI); TCGA; artificail cancer deep genes; genetic intelligence pathway pathway; zno learning]