Federated Learning on Transcriptomic Data: Model Quality and Performance Trade-Offs. Computational Science – ICCS 2024: 24th International Conference, Malaga, Spain, July 2–4, 2024, Proceedings, Part IV, 279–293, Springer-Verlag, Berlin, Heidelberg, 2024. [PUMA: Prognosis Learning, Type Disease Classification, Federated Cell] URL
CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation. Genome Med., (15)1:61, August 2023. [PUMA: Macrophages; learning; Myocardial topic_lifescience infarction; Immunocompromised; Cell therapy; Machine Single-cell]
VRCellLabeler (VCL): Immersive labeling of Platynereis embryo's cell lineage trees in Virtual Reality. September 2022. [PUMA: lineage VRCellLabeler labeling Platynereis Immersive Virtual trees Reality embryo's cell VCL]
Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology. Current Biology, (32)22:4817--4831.e9, 2022. [PUMA: topology, cup, zebrafish, simulation topology collective optic matrix migration, cell] URL
Masakari: visualization supported statistical analysis of genome segmentations. BMC Bioinformatics, (21)1:437, Springer Science and Business Media LLC, October 2020. [PUMA: ChIP-seq; Chromatin state; development; Histone Cell modifications]
Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semantics, (10)1:16, Springer Science and Business Media LLC, October 2019. [PUMA: Web Design language Ontology; tracking; patterns; Cell ontology]