Publications

Patryk Burek, Nico Scherf, und Heinrich Herre. Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semantics, (10)1:16, Springer Science and Business Media LLC, Oktober 2019. [PUMA: Web Design language Ontology; tracking; patterns; Cell ontology]

Karen G. Soans, Ana Patricia Ramos, Jaydeep Sidhaye, Abhijeet Krishna, Anastasia Solomatina, Karl B. Hoffmann, Raimund Schl��ler, Jochen Guck, Ivo F. Sbalzarini, Carl D. Modes, und Caren Norden. Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology. Current Biology, (32)22:4817--4831.e9, 2022. [PUMA: topology, cup, zebrafish, simulation topology collective optic matrix migration, cell] URL

Praveen Vasudevan, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Anne-Marie Galow, Dirk Koczan, Tobias Lindner, Wendy Bergmann, Brigitte Mueller-Hilke, Brigitte Vollmar, Bernd Joachim Krause, Olaf Wolkenhauer, Gustav Steinhoff, und Robert David. CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation. Genome Med., (15)1:61, August 2023. [PUMA: Macrophages; learning; Myocardial topic_lifescience infarction; Immunocompromised; Cell therapy; Machine Single-cell]

Dirk Zeckzer, Alrik Hausdorf, Nicole Hinzmann, Lydia Müller, und Daniel Wiegreffe. Masakari: visualization supported statistical analysis of genome segmentations. BMC Bioinformatics, (21)1:437, Springer Science and Business Media LLC, Oktober 2020. [PUMA: ChIP-seq; Chromatin state; development; Histone Cell modifications]