VRCellLabeler (VCL): Immersive labeling of Platynereis embryo's cell lineage trees in Virtual Reality. September 2022. [PUMA: Immersive Platynereis Reality VCL VRCellLabeler Virtual cell embryo's labeling lineage trees]
Federated Learning on Transcriptomic Data: Model Quality and Performance Trade-Offs. Computational Science – ICCS 2024: 24th International Conference, Malaga, Spain, July 2–4, 2024, Proceedings, Part IV, 279–293, Springer-Verlag, Berlin, Heidelberg, 2024. [PUMA: Cell Classification, Disease Federated Learning, Prognosis Type] URL
Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology. Current Biology, (32)22:4817--4831.e9, 2022. [PUMA: cell collective cup, matrix migration, optic simulation topology topology, zebrafish,] URL
Ontology patterns for the representation of quality changes of cells in time. J. Biomed. Semantics, (10)1:16, Springer Science and Business Media LLC, October 2019. [PUMA: Cell Design Ontology; Web language ontology patterns; tracking;]
Masakari: visualization supported statistical analysis of genome segmentations. BMC Bioinformatics, (21)1:437, Springer Science and Business Media LLC, October 2020. [PUMA: Cell ChIP-seq; Chromatin Histone development; modifications state;]
CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation. Genome Med., (15)1:61, August 2023. [PUMA: Cell Immunocompromised; Machine Macrophages; Myocardial Single-cell infarction; learning; therapy; topic_lifescience]