Publications

Robert Haase, Hans-Joachim Böhme, Daniel Zips, and Nasreddin Abolmaali. Swarm intelligence for medical volume segmentation: the contribution of self-reproduction. KI 2011: Advances in Artificial Intelligence: 34th Annual German Conference on AI, Berlin, Germany, October 4-7, 2011. Proceedings 34, 111--121, 2011. [PUMA: imported topic_lifescience]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordao Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, and others. Zebrahub--Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors. BioRxiv, 2023--03, Cold Spring Harbor Laboratory, 2023. [PUMA: imported topic_lifescience]

Beth A Cimini, Peter Bankhead, Rocco d'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L Jones, Florian Jug, and others. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science, (137)20The Company of Biologists, 2024. [PUMA: imported topic_lifescience]

R Haase, A Koch, D Zips, J Steinbach, M Baumann, J Kotzerke, K Zöphel, and N Abolmaali. Two or four hour 18F FMISO-PET in HNSCC. Nuklearmedizin, (50)01:22--27, Georg Thieme Verlag KG, 2011. [PUMA: imported topic_lifescience]

Theresa Suckert, Johannes Müller, Elke Beyreuther, Behnam Azadegan, Anja Brüggemann, Rebecca Bütof, Antje Dietrich, Malte Gotz, Robert Haase, Michael Schürer, and others. High-precision image-guided proton irradiation of mouse brain sub-volumes. Radiotherapy and Oncology, (146):205--212, Elsevier, 2020. [PUMA: imported topic_lifescience]

Anna Bandurska-Luque, Steffen Löck, Robert Haase, Christian Richter, Klaus Zöphel, Nasreddin Abolmaali, Annekatrin Seidlitz, Steffen Appold, Mechthild Krause, Jörg Steinbach, and others. FMISO-PET-based lymph node hypoxia adds to the prognostic value of tumor only hypoxia in HNSCC patients. Radiotherapy and Oncology, (130):97--103, Elsevier, 2019. [PUMA: imported topic_lifescience]

Matthias Arzt, Joran Deschamps, Christopher Schmied, Tobias Pietzsch, Deborah Schmidt, Pavel Tomancak, Robert Haase, and Florian Jug. LABKIT: labeling and segmentation toolkit for big image data. Frontiers in computer science, (4):777728, Frontiers, 2022. [PUMA: imported topic_lifescience]

A Bandurska-Luque, S Loeck, R Haase, C Richter, K Zoephel, R Perrin, A Seidlitz, S Zschaeck, S Appold, M Krause, and others. The prognostic value of FMISO-PET-based synchronous tumor and lymph node hypoxia outperforms that of tumor hypoxia only in patients with advanced stage HNSSC-secondary analysis of Dresden FMISO trail. ONCOLOGY RESEARCH AND TREATMENT, (41):186--186, 2018. [PUMA: imported topic_lifescience]

Lucrezia C Ferme, Allyson Q Ryan, Robert Haase, Carl D Modes, and Caren Norden. Timely neurogenesis enables increased nuclear packing order during neuronal lamination. bioRxiv, 2024--11, Cold Spring Harbor Laboratory, 2024. [PUMA: imported topic_lifescience]

Martin Weigert, Uwe Schmidt, Robert Haase, Ko Sugawara, and Gene Myers. Star-convex polyhedra for 3D object detection and segmentation in microscopy. Proceedings of the IEEE/CVF winter conference on applications of computer vision, 3666--3673, 2020. [PUMA: imported topic_lifescience]

Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, and others. Metrics reloaded: recommendations for image analysis validation. Nature methods, (21)2:195--212, Nature Publishing Group US New York, 2024. [PUMA: imported topic_lifescience]

Annika Reinke, Minu D Tizabi, Carole H Sudre, Matthias Eisenmann, Tim Rädsch, Michael Baumgartner, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, and others. Common limitations of image processing metrics: A picture story. arXiv preprint arXiv:2104.05642, 2021. [PUMA: imported topic_lifescience]

Suse Seidemann, Florian Salomon, Karl Hoffmann, Thomas Kurth, Ivo F Sbalzarini, Robert Haase, and Marius Ader. Automated Quantification of Photoreceptor Outer Segments in Developing and Degenerating Retinas on Microscopic Images across Scales. Investigative Ophthalmology & Visual Science, (65)7:5878--5878, The Association for Research in Vision and Ophthalmology, 2024. [PUMA: imported topic_lifescience]

Robert Haase, Christian Tischer, Peter Bankhead, Kota Miura, and Beth A Cimini. A Call for FAIR and Open-Access Training Materials to advance Bioimage Analysis. 2024. [PUMA: imported topic_lifescience]

Robert Haase, Elnaz Fazeli, David Legland, Michael Doube, Siân Culley, Ilya Belevich, Eija Jokitalo, Martin Schorb, Anna Klemm, and Christian Tischer. A hitchhiker's guide through the bio-image analysis software universe. Febs Letters, (596)19:2472--2485, 2022. [PUMA: imported topic_lifescience]

S Zschaeck, R Haase, K Zophel, N Abolmaali, R Perrin, J Kotzerke, J Steinbach, D Zips, M Krause, and M Baumann. Stability of the Hypoxia Tracer 18F-FMISO during sequential PET-Studies in Patients with radio chemotherapy ENT-Tumors and Correlation of functional Tumor-Subvolumes for Recurrence Localization. Strahlentherapie und Onkologie, (190):52--52, Urban & Vogel, 2014. [PUMA: imported topic_lifescience]

Annika Jakobi, Anna Bandurska-Luque, Kristin Stützer, Robert Haase, Steffen Löck, Linda-Jacqueline Wack, David Mönnich, Daniela Thorwarth, Damien Perez, Armin Lühr, and others. Identification of patient benefit from proton therapy for advanced head and neck cancer patients based on individual and subgroup normal tissue complication probability analysis. International Journal of Radiation Oncology* Biology* Physics, (92)5:1165--1174, Elsevier, 2015. [PUMA: imported topic_lifescience]

Akanksha Jain, Vladimir Ulman, Arghyadip Mukherjee, Mangal Prakash, Marina B Cuenca, Lokesh G Pimpale, Stefan Münster, Robert Haase, Kristen A Panfilio, Florian Jug, and others. Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation. Nature communications, (11)1:5604, Nature Publishing Group UK London, 2020. [PUMA: imported topic_lifescience]

Matús Kalas, Laure Plantard, Natasa Sladoje, Joakim Lindblad, Moritz Alexander Kirschmann, Martin Jones, Anatole Chessel, Leandro Aluisio Scholz, Fabienne Rössler, Alexandre Dufour, and others. EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020). ELIXIR All Hands 2020, 2020. [PUMA: imported topic_lifescience]

Nasreddin Abolmaali, R Haase, Arne Koch, Daniel Zips, Jörg Steinbach, Michael Baumann, Jörg Kotzerke, and Klaus Zöphel. Zwei oder vier Stunden 18F FMISO-PET in Kopf-Hals-Karzinomen: Wann ist der Bildkontrast am höchsten?. Nuklearmedizin, (50):22--27, 2011. [PUMA: imported topic_lifescience]