Publications

R Haase, Klaus Zöphel, Michael Andreeff, Jörg Steinbach, Jörg Kotzerke, und N Abolmaali. Usefulness of voxel-wise Pearson correlation coefficient for reproducibility and repeatability measurements in PET. Nuklearmedizin, 2012. [PUMA: imported topic_lifescience]

Johannes Girstmair, HongKee Moon, Charlène Brillard, Robert Haase, und Pavel Tomancak. Time to upgrade: A new OpenSPIM guide to build and operate advanced OpenSPIM configurations. Advanced biology, (6)4:2101182, 2022. [PUMA: imported topic_lifescience]

Chong Zhang, Alban Gaignard, Matus Kalas, Florian Levet, Felipe Delestro, Joakim Lindblad, Natasa Sladoje, Laure Plantard, Alain Latour, Robert Haase, und others. Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community. arXiv preprint arXiv:2312.11256, 2023. [PUMA: imported topic_lifescience]

Metin Gabriel Davutoglu, Veikko F Geyer, Lukas Niese, Johannes R Soltwedel, Marcelo L Zoccoler, Robert Haase, Nils Kroeger, Stefan Diez, und Nicole Poulsen. Gliding motility of the diatom Craspedostauros australis correlates with the intracellular movement of raphid-specific myosins. bioRxiv, 2024--03, Cold Spring Harbor Laboratory, 2024. [PUMA: imported topic_lifescience]

Robert Haase, Akanksha Jain, Stéphane Rigaud, Daniela Vorkel, Pradeep Rajasekhar, Theresa Suckert, Talley J Lambert, Juan Nunez-Iglesias, Daniel P Poole, Pavel Tomancak, und others. Interactive design of GPU-accelerated image data flow graphs and cross-platform deployment using multi-lingual code generation. bioRxiv, 2020--11, Cold Spring Harbor Laboratory, 2020. [PUMA: imported topic_lifescience]

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Yang-Joon Kim, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, und others. A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors. Cell, (187)23:6742--6759, Elsevier, 2024. [PUMA: imported topic_lifescience]

Daniela Vorkel, und Robert Haase. GPU-accelerating ImageJ Macro image processing workflows using CLIJ. Bioimage Data Analysis Workflows--Advanced Components and Methods, 89--114, Springer International Publishing Cham, 2022. [PUMA: imported topic_lifescience]

Johannes Soltwedel, Theresa Suckert, Elke Beyreuther, Moritz Schneider, Marc Boucsein, Elisabeth Bodenstein, Sindi Nexhipi, Liane Stolz-Kieslich, Mechthild Krause, Cläre von Neubeck, und others. Slice2Volume: Fusion of multimodal medical imaging and light microscopy data of irradiation-injured brain tissue in 3D. Radiotherapy and Oncology, (182):109591, Elsevier, 2023. [PUMA: imported topic_lifescience]

Robert Haase. Image processing filters for grids of cells analogous to filters processing grids of pixels. Frontiers in Computer Science, 105, Frontiers, 2021. [PUMA: imported topic_lifescience]

Rebecca Bütof, Steffen Löck, Maher Soliman, Robert Haase, Rosalind Perrin, Christian Richter, Steffen Appold, Mechthild Krause, und Michael Baumann. Dose--volume predictors of early esophageal toxicity in non-small cell lung cancer patients treated with accelerated-hyperfractionated radiotherapy. Radiotherapy and Oncology, (143):44--50, Elsevier, 2020. [PUMA: imported topic_lifescience]

R Haase, R Perrin, K Zöphel, H-J Böhme, N Abolmaali, und others. Swarm intelligence allows automatic volume analysis basing on low contrast 18 F-fluoromisonidazole-PET of head and neck cancer patients. 2013. [PUMA: imported topic_lifescience]

Kristin Stützer, Robert Haase, Fabian Lohaus, Steffen Barczyk, Florian Exner, Steffen Löck, Jan Rühaak, Bianca Lassen-Schmidt, Dörte Corr, und Christian Richter. Evaluation of a deformable registration algorithm for subsequent lung computed tomography imaging during radiochemotherapy. Medical Physics, (43)9:5028--5039, American Association of Physicists in Medicine, 2016. [PUMA: imported topic_lifescience]

Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry, und Pavel Tomancak. Analysis of actomyosin dynamics at local cellular and tissue scales using time-lapse movies of cultured drosophila egg chambers. JoVE (Journal of Visualized Experiments), 148:e58587, 2019. [PUMA: imported topic_lifescience]

Robert Haase. Optimisation and Validation of a Swarm Intelligence Based Segmentation Algorithm for Low Contrast Positron Emission Tomography. 2014. [PUMA: imported topic_lifescience]

Alexa Sadier, Neal Anthwal, Andrew L Krause, Renaud Dessalles, Michael Lake, Laurent Bentolila, Robert Haase, Natalie Nieves, Sharlene Santana, und Karen Sears. Bat teeth illuminate the diversification of mammalian tooth classes. bioRxiv, 2021--12, Cold Spring Harbor Laboratory, 2021. [PUMA: imported topic_lifescience]

Alexa Sadier, Neal Anthwal, Andrew L Krause, Renaud Dessalles, Michael Lake, Laurent A Bentolila, Robert Haase, Natalie A Nieves, Sharlene E Santana, und Karen E Sears. Bat teeth illuminate the diversification of mammalian tooth classes. Nature communications, (14)1:4687, Nature Publishing Group UK London, 2023. [PUMA: imported topic_lifescience]

Johannes Richard Soltwedel, und Robert Haase. Challenges and opportunities for bioimage analysis core-facilities. Journal of Microscopy, (294)3:338--349, 2024. [PUMA: imported topic_lifescience]

Robert Haase, Christian Tischer, Jean-Karim Hériché, und Nico Scherf. Benchmarking Large Language Models for Bio-Image Analysis Code Generation. bioRxiv, 2024--04, Cold Spring Harbor Laboratory, 2024. [PUMA: imported topic_language topic_lifescience]

Metin G Davutoglu, Veikko F Geyer, Lukas Niese, Johannes R Soltwedel, Marcelo L Zoccoler, Valeria Sabatino, Robert Haase, Nils Kröger, Stefan Diez, und Nicole Poulsen. Gliding motility of the diatom Craspedostauros australis coincides with the intracellular movement of raphid-specific myosins. Communications Biology, (7)1:1187, Nature Publishing Group UK London, 2024. [PUMA: imported topic_lifescience]

Sebastian Zschaeck, Steffen Löck, Stefan Leger, Robert Haase, Anna Bandurska-Luque, Steffen Appold, Jörg Kotzerke, Daniel Zips, Christian Richter, Volker Gudziol, und others. FDG uptake in normal tissues assessed by PET during treatment has prognostic value for treatment results in head and neck squamous cell carcinomas undergoing radiochemotherapy. Radiotherapy and Oncology, (122)3:437--444, Elsevier, 2017. [PUMA: imported topic_lifescience]