Publications

Florens Rohde, Victor Christen, Martin Franke, und Erhard Rahm. Multi-Layer Privacy-Preserving Record Linkage with Clerical Review based on gradual information disclosure. Datenbanksysteme für Business, Technologie und Web (BTW 2025), 393--415, Gesellschaft für Informatik, Bonn, 2025. [PUMA: privacy xack yaff]

Robert Haase, Christian Tischer, Peter Bankhead, Kota Miura, und Beth A Cimini. A Call for FAIR and Open-Access Training Materials to advance Bioimage Analysis. 2024. [PUMA: xack]

Beth A Cimini, Peter Bankhead, Rocco d'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L Jones, Florian Jug, und others. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science, (137)20The Company of Biologists, 2024. [PUMA: xack]

Robert Haase, Christian Tischer, Jean-Karim Hériché, und Nico Scherf. Benchmarking Large Language Models for Bio-Image Analysis Code Generation. bioRxiv, 2024--04, Cold Spring Harbor Laboratory, 2024. [PUMA: xack]

Ringo Baumann, Matti Berthold, Dov M. Gabbay, und Odinaldo Rodrigues. Forgetting in Abstract Argumentation: Limits and Possibilities. Journal of Artificial Intelligence Research, (82)2025. [PUMA: abstract_argumentation argumentation forgetting topic_knowledge xack yaff] URL

Matti Berthold. On Syntactic Forgetting with relativized Strong Persistence. In Nina Gierasimczuk, und Jesse Heyninck (Hrsg.), Proceedings of the 22nd International Workshop on Nonmonotonic Reasoning (NMR 2024) co-located with 21st International Conference on Principles of Knowledge Representation and Reasoning (KR 2024), Hanoi, Vietnam, November 2-4, 2024, (3835):173--182, CEUR-WS.org, 2024. [PUMA: answer_set_programming forgetting logic_programming topic_knowledge xack yaff] URL

Josefine Umlauft, Christopher W Johnson, Philippe Roux, Daniel Taylor Trugman, Albanne Lecointre, Andrea Walpersdorf, Ugo Nanni, Florent Gimbert, Bertrand Rouet-Leduc, Claudia Hulbert, und others. Mapping glacier basal sliding with machine learning. EarthArXiv, 2023. [PUMA: xack]

Johanna Zitt, Patrick Paitz, Fabian Walter, und Josefine Umlauft. Self-Supervised Coherence-Based Denoising on Cryoseismological Distributed Acoustic Sensing Data. Authorea Preprints, Authorea, 2024. [PUMA: xack]

Lukas Gienapp, Niklas Deckers, Martin Potthast, und Harrisen Scells. Learning Effective Representations for Retrieval Using Self-Distillation with Adaptive Relevance Margins. CoRR, (abs/2407.21515)August 2024. [PUMA: xack yaff] URL

Michał Patryk Miazga, Daniel Abitz, Matthias Täschner, und Erhard Rahm. Automated Configuration of Schema Matching Tools: A Reinforcement Learning Approach. Datenbanksysteme für Business, Technologie und Web (BTW 2025), 331--354, Gesellschaft für Informatik, Bonn, 2025. [PUMA: topic_lifescience xack yaff]

Daniel Mederer, Hannes Feilhauer, Eya Cherif, Katja Berger, Tobias B. Hank, Kyle R. Kovach, Phuong D. Dao, Bing Lu, Philip A. Townsend, und Teja Kattenborn. Plant trait retrieval from hyperspectral data: Collective efforts in scientific data curation outperform simulated data derived from the PROSAIL model. ISPRS Open Journal of Photogrammetry and Remote Sensing, 100080, Elsevier BV, Dezember 2024. [PUMA: topic_earthenvironment xack yaff] URL

Kristina Vogel, Johanna Moeller, Nina G. Bozhanova, Markus Voehler, Anja Penk, Jens Meiler, und Clara T. Schoeder. Computational Engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal of Structural Biology, (217)1:108180, 2025. [PUMA: topic_lifescience xack yaff] URL

Anderson Faustino da Silva, Jeronimo Castrillon, und Fernando Magno Quint\ ao Pereira. A Comparative Study on the Accuracy and the Speed of Static and Dynamic Program Classifiers. In IEEE (Hrsg.), Proceedings of the 34th ACM SIGPLAN International Conference on Compiler Construction (CC 2025), Association for Computing Machinery, New York, NY, USA, März 2025. [PUMA: xack yaff]

Christopher Rost, Riccardo Tommasini, Angela Bonifati, Emanuele Della Valle, Erhard Rahm, Keith W Hare, Stefan Plantikow, Petra Selmer, und Hannes Voigt. Seraph: Continuous Queries on Property Graph Streams.. EDBT, 234--247, 2024. [PUMA: area_bigdata topic_graph xack yaff]

Miriam Louise Carnot, Eric Peukert, und Bogdan Franczyk. Enhancing Roadway Safety: LIDAR-based Tree Clearance Analysis. CoRR, (abs/2402.18309)2024. [PUMA: area_bigdata xack yaff] URL

Vincent D Friedrich, Peter Pennitz, Emanuel Wyler, Julia M Adler, Dylan Postmus, Luiz Gustavo Teixeira Alves, Julia Prigann, Fabian Pott, Daria Vladimirova, Thomas Hoefler, Cengiz Goekeri, Markus Landthaler, Christine Goffinet, Antoine-Emmanuel Saliba, Markus Scholz, Martin Witzenrath, Jakob Trimpert, Holger Kirsten, und Geraldine Nouailles. Neural Network-Assisted Humanization of COVID-19 Hamster scRNAseq Data Reveals Matching Severity States in Human Disease. Cold Spring Harbor Laboratory, Januar 2024. [PUMA: Data HCOVID-19 Severity States scRNAseq xack yaff] URL

Bowen Song, Chengjin Xu, Kossi Amouzouvi, Maocai Wang, Jens Lehmann, und Sahar Vahdati. Distinct Geometrical Representations for Temporal and Relational Structures in Knowledge Graphs. In Danai Koutra, Claudia Plant, Manuel Gomez Rodriguez, Elena Baralis, und Francesco Bonchi (Hrsg.), Machine Learning and Knowledge Discovery in Databases: Research Track - European Conference, ECML PKDD 2023, Turin, Italy, September 18-22, 2023, Proceedings, Part III, (14171):601--616, Springer, 2023. [PUMA: Distinct Geometrical Relational Representations Structures Temporal xack] URL

Alexander Brauckmann, Anderson Faustino da Silva, Jeronimo Castrillon, und Hugh Leather. DFA-Net: A Compiler-Specific Neural Architecture for Robust Generalization in Data Flow Analyses. In IEEE (Hrsg.), Proceedings of the 34th ACM SIGPLAN International Conference on Compiler Construction (CC 2025), Association for Computing Machinery, New York, NY, USA, März 2025. [PUMA: NN compiler data-flow xack]

João Paulo C. de Lima, Benjamin F. Morris III, Asif Ali Khan, Jeronimo Castrillon, und Alex K. Jones. Count2Multiply: Reliable In-memory High-Radix Counting. In arxiv (Hrsg.), 1-14, Arxiv, September 2024. [PUMA: LLM accelerator computing-in-memory xack yaff] URL

Marie-Sophie von Braun, Kristin Starke, Lucas Peter, Daniel Kürsten, Florian Welle, Hans Ralf Schneider, Max Wawrzyniak, Daniel P O Kaiser, Gordian Prasse, Cindy Richter, Elias Kellner, Marco Reisert, Julian Klingbeil, Anika Stockert, Karl-Titus Hoffmann, Gerik Scheuermann, Christina Gillmann, und Dorothee Saur. Prediction of tissue and clinical thrombectomy outcome in acute ischaemic stroke using deep learning. In Masud Husain (Hrsg.), Brain, awaf013, Januar 2025. [PUMA: biomarker cdss cnn computer_vision deep_learning neuroimaging neurology nopdf topic_lifescience xack yaff] URL

David Montero, Miguel D Mahecha, César Aybar, Clemens Mosig, und Sebastian Wieneke. Facilitating advanced Sentinel-2 analysis through a simplified computation of Nadir BRDF Adjusted Reflectance. arXiv preprint arXiv:2404.15812, 2024. [PUMA: xack]

Eya Cherif, Hannes Feilhauer, Katja Berger, Michael Ewald, Tobias B Hank, Kyle R Kovach, Philip A Townsend, Zhihui Wang, und Teja Kattenborn. From spectra to functional plant traits: Transferable multi-trait models from heterogeneous and sparse data. EGU General Assembly Conference Abstracts, EGU-10901, 2023. [PUMA: xack]

D Montero, G Kraemer, A Anghelea, CA Camacho, G Brandt, G Camps-Valls, F Cremer, I Flik, F Gans, S Habershon, C Ji, T Kattenborn, L Martínez-Ferrer, F Martinuzzi, M Reinhardt, M Söchting, K Teber, und M Mahecha. Data cubes for earth system research: Challenges ahead. EarthArXiv (California Digital Library), 2023. [PUMA: xack]

Francesco Martinuzzi, Miguel D Mahecha, Gustau Camps-Valls, David Montero, Tristan Williams, und Karin Mora. Learning extreme vegetation response to climate drivers with recurrent neural networks. Nonlinear Processes in Geophysics, (31)4:535-557, Copernicus Publications, 2024. [PUMA: xack]

David Montero, Guido Kraemer, Anca Anghelea, César Aybar, Gunnar Brandt, Gustau Camps-Valls, Felix Cremer, Ida Flik, Fabian Gans, Sarah Habershon, und et al.. Earth System Data Cubes: Avenues for advancing Earth system research. Environmental Data Science, (3):e27, 2024. [PUMA: topic_earthenvironment xack yaff]

Maximilian Joas, Daniel Freund, Robert Haase, Erhard Rahm, und Jan Ewald. Zero-Shot, Big-Shot, Active-Shot - How to estimate cell confluence, lazily. bioRxiv, Cold Spring Harbor Laboratory, 2025. [PUMA: topic_lifescience xack yaff] URL

Tom Richard Vargis, und Siavash Ghiasvand. Assessing Anonymized System Logs Usefulness for Behavioral Analysis in RNN Models. Proceedings of the International Workshop on Data-driven Resilience Research, (3376)arXiv, Leipzig, Germany, Dezember 2022. [PUMA: xack yaff] URL

Tom Richard Vargis, und Siavash Ghiasvand. Content-Aware Depth-Adaptive Image Restoration. Proceedings of the 29th International Conference on Automation and Computing, Sunderland, UK, Januar 2024. [PUMA: xack yaff] URL

Olivier C Pasche, Jonathan Wider, Zhongwei Zhang, Jakob Zscheischler, und Sebastian Engelke. Validating Deep-Learning Weather Forecast Models on Recent High-Impact Extreme Events. arXiv preprint arXiv:2404.17652, 2024. [PUMA: xack]

Jonathan Wider, Jakob Kruse, Nils Weitzel, Janica C Bühler, Ullrich Köthe, und Kira Rehfeld. Towards learned emulation of interannual water isotopologue variations in General Circulation Models. Environmental Data Science, (2):e35, Cambridge University Press, 2023. [PUMA: xack]

Olivier C. Pasche, Jonathan Wider, Zhongwei Zhang, Jakob Zscheischler, und Sebastian Engelke. Validating Deep Learning Weather Forecast Models on Recent High-Impact Extreme Events. Artificial Intelligence for the Earth Systems, (4)1:e240033, American Meteorological Society, Boston MA, USA, 2025. [PUMA: topic_earthenvironment xack yaff] URL

Salim Soltani, Olga Ferlian, Nico Eisenhauer, Hannes Feilhauer, und Teja Kattenborn. From simple labels to semantic image segmentation: leveraging citizen science plant photographs for tree species mapping in drone imagery. Biogeosciences, (21)11:2909–2935, Copernicus GmbH, Juni 2024. [PUMA: xack] URL

Maximilian Joas, Neringa Jurenaite, Dusan Prascevic, Nico Scherf, und Jan Ewald. A generalized and versatile framework to train and evaluate autoencoders for biological representation learning and beyond: AUTOENCODIX. bioRxiv, Cold Spring Harbor Laboratory, Dezember 2024. [PUMA: topic_lifescience xack] URL

Rhea Sanjay Sukthanker, Arber Zela, Benedikt Staffler, Aaron Klein, Lennart Purucker, Joerg K. H. Franke, und Frank Hutter. HW-GPT-Bench: Hardware-Aware Architecture Benchmark for Language Models. The Thirty-eight Conference on Neural Information Processing Systems Datasets and Benchmarks Track (NeurIPS'24), 2024. [PUMA: AutoML Xack Yaff large_language_models neural_architecture_search]

Miriam Louise Carnot, Lorenz Heinemann, Jan Braker, Tobias Schreieder, Johannes Kiesel, Maik Fröbe, Martin Potthast, und Benno Stein. On Stance Detection in Image Retrieval for Argumentation. Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2562–2571, Association for Computing Machinery, New York, NY, USA, 2023. [PUMA: xack] URL

Stefan Lüdtke, Christian Bartelt, und Heiner Stuckenschmidt. Outlying aspect mining via sum-product networks. Advances in Knowledge Discovery and Data Mining, 27--38, Springer Nature Switzerland, Cham, 2023. [PUMA: xack]

Lucas Lange, Tobias Schreieder, Victor Christen, und Erhard Rahm. Slice it up: Unmasking user identities in smartwatch health data. 2023. [PUMA: xack]

Dominic Windisch, Jeffrey Kelling, Guido Juckeland, und André Bieberle. Real-time data processing for ultrafast X-ray computed tomography using modular CUDA based pipelines. Computer Physics Communications, (287):108719, 2023. [PUMA: xack] URL

Yannis Dimopoulos, Wolfgang Dvorák, Matthias König, Anna Rapberger, Markus Ulbricht, und Stefan Woltran. Sets Attacking Sets in Abstract Argumentation. TU Wien, 2023. [PUMA: xack]

Mani Lokamani, Filip Kilibarda, Florian Günther, Jeffrey Kelling, Alexander Strobel, Peter Zahn, Guido Juckeland, Kurt V. Gothelf, Elke Scheer, Sibylle Gemming, und Artur Erbe. Stretch Evolution of Electronic Coupling of the Thiophenyl Anchoring Group with Gold in Mechanically Controllable Break Junctions. The Journal of Physical Chemistry Letters, (14)24:5709-5717, 2023. [PUMA: xack] URL

Johannes Frey, Marvin Hofer, und Sebastian Hellmann. Studying Linked Data Accessibility Healthiness for the Long Tail of the Data Web.. QuWeDa/MEPDaW@ ISWC, 55--64, 2023. [PUMA: xack]

Melissa Sanabria, Jonas Hirsch, und Anna R Poetsch. The human genome's vocabulary as proposed by the DNA language model GROVER. bioRxiv, Juli 2023. [PUMA: xack]

Peter Christen, und Rainer Schnell. Thirty-three myths and misconceptions about population data: from data capture and processing to linkage. Int. J. Popul. Data Sci., (8)1:2115, Swansea University, Januar 2023. [PUMA: xack]

Sandeep Kumar, Hossein Tahmasbi, Kushal Ramakrishna, Mani Lokamani, Svetoslav Nikolov, Julien Tranchida, Mitchell A Wood, und Attila Cangi. Transferable interatomic potential for aluminum from ambient conditions to warm dense matter. Phys. Rev. Res., (5)3American Physical Society (APS), September 2023. [PUMA: xack]

Franz Baader, Francesco Kriegel, und Adrian Nuradiansyah. Treating role assertions as first-class citizens in repair and error-tolerant reasoning. Proceedings of the 38th ACM/SIGAPP Symposium on Applied Computing, 974--982, ACM, New York, NY, USA, März 2023. [PUMA: Xack]

Jakob Rehof. LIPIcs, Volume 299, FSCD 2024, Complete Volume. Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2024. [PUMA: Xack Yaff imported] URL

Maria Wyrzykowska, Gabriel della Maggiora, Nikita Deshpande, Ashkan Mokarian, und Artur Yakimovich. A Benchmark for Virus Infection Reporter Virtual Staining in Fluorescence and Brightfield Microscopy. Cold Spring Harbor Laboratory, September 2024. [PUMA: Xack imported] URL

Vaibhav Sharma, und Artur Yakimovich. A deep learning dataset for sample preparation artefacts detection in multispectral high-content microscopy. Scientific Data, (11)1:232, 23.02.2024. [PUMA: Xack imported] URL

Shahbaz Syed, Tariq Yousef, Khalid Al-Khatib, Stefan Jänicke, und Martin Potthast. SUMMARY EXPLORER: Visualizing the State of the Art in Text Summarization. In Marie-Francine Moens, Xuanjing Huang, Lucia Specia, und Scott Wen-tau Yih (Hrsg.), 26th Conference on Empirical Methods in Natural Language Processing (EMNLP 2021), 185--194, Association for Computational Linguistics, November 2021. [PUMA: EXPLORER SUMMARY Summarization Text Visualizing Xack]

Parvaneh Joharinad, und Jürgen Jost. Weighted complexes, cohomology and Laplace operators. Mathematical Principles of Topological and Geometric Data Analysis, 2:65--81, Springer International Publishing, Cham, 2023. [PUMA: Laplace Weighted Xack Yaff cohomology complexes operators]