Publications

Callum John Rowlandson Murphy-Barltrop, Ed Mackay, and Philip Jonathan. Inference for bivariate extremes via a semi-parametric angular-radial model. Extremes : statistical theory and applications in science, engineering and economics, Springer Science + Business Media, Dordrecht, Oct 3, 2024. [PUMA: FIS_scads imported topic_mathfoundation yaff]

C. J. R. Murphy-Barltrop, J. L. Wadsworth, and E. F. Eastoe. Improving estimation for asymptotically independent bivariate extremes via global estimators for the angular dependence function. Extremes : statistical theory and applications in science, engineering and economics, (27)4Springer Science + Business Media, Dordrecht, Aug 13, 2024. [PUMA: FIS_scads imported topic_mathfoundation yaff]

Lídia Maria André, Ryan Campbell, Eleanor D’Arcy, Aiden Farrell, Dáire Healy, Lydia Kakampakou, Conor Murphy, Callum John Rowlandson Murphy-Barltrop, and Matthew Speers. Extreme value methods for estimating rare events in Utopia. Extremes : statistical theory and applications in science, engineering and economics, 1--23, Springer Science + Business Media, Dordrecht, Nov 1, 2024. [PUMA: FIS_import topic_mathfoundation yaff]

Mikael Vejdemo-Johansson, CUNY College of Staten Island, and 2800 Victory Boulevard, 1S-215, Staten Island, NY 10314, USA, Sayan Mukherjee, CUNY Graduate Center, 365 5th Avenue, and New York NY 10016, USA, Center for Scalable Data Analytics and and Artificial Intelligence, Universit¨at Leipzig, and Humboldtstraße 25, Leipzig, Germany 04105, Max Planck and Institute for Mathematics in the Sciences, Inselstraße 22 and 04103 Leipzig Germany, and Departments of Statistical Science, and Mathematics, Computer Science, and Biostatistics & and Bioinformatics, Duke University, Durham, NC 27708, USA. Multiple hypothesis testing with persistent homology. Found. Data Sci., (4)4:667--705, American Institute of Mathematical Sciences (AIMS), 2022. [PUMA: Multiple homology hypothesis persistent testing; topic_mathfoundation yaff]

Michele Caprio, and Sayan Mukherjee. Ergodic theorems for dynamic imprecise probability kinematics. International Journal of Approximate Reasoning, (152):325-343, 2023. [PUMA: Dynamic Ergodic Imprecise Lower Strong Subjective imprecise kinematics large law numbers probabilities probability topic_mathfoundation xack yaff] URL

Antonio Bikić, and Sayan Mukherjee. Pragmatist Intelligence: Where the Principle of Usefulness Can Take ANNs. 2024. [PUMA: ANN Intelligence; Pragmatist Usefulness; topic_mathfoundation yaff] URL

Andrea Agazzi, Jianfeng Lu, and Sayan Mukherjee. Global optimality of Elman-type RNNs in the mean-field regime. In Andreas Krause, Emma Brunskill, Kyunghyun Cho, Barbara Engelhardt, Sivan Sabato, and Jonathan Scarlett (Eds.), Proceedings of the 40th International Conference on Machine Learning, (202):196--227, PMLR, 23--29 Jul 2023. [PUMA: Elman-type Optimality, mean-field regime topic_mathfoundation xack yaff {RNN}s,] URL

Vincent D. Friedrich, Peter Pennitz, Emanuel Wyler, Julia M. Adler, Dylan Postmus, Kristina Müller, Luiz Gustavo Teixeira Alves, Julia Prigann, Fabian Pott, Daria Vladimirova, Thomas Hoefler, Cengiz Goekeri, Markus Landthaler, Christine Goffinet, Antoine-Emmanuel Saliba, Markus Scholz, Martin Witzenrath, Jakob Trimpert, Holger Kirsten, and Geraldine Nouailles. Neural network-assisted humanisation of COVID-19 hamster transcriptomic data reveals matching severity states in human disease. eBioMedicine, (108):105312, 2024. [PUMA: COVID-19, Cross-species Deep Disease Hamster RNA-seq, Single-cell analysis, learning matching, model, state topic_mathfoundation xack yaff] URL

E. B. L. Mackay, C. J. R. Murphy-Barltrop, and P. Jonathan. The SPAR Model: A New Paradigm for Multivariate Extremes: Application to Joint Distributions of Metocean Variables. Journal of Offshore Mechanics and Arctic Engineering, (147)1ASME International, July 2024. [PUMA: imported topic_mathfoundation yaff] URL

Lukas Silvester Barth, Fatemeh, Fahimi, Parvaneh Joharinad, Jürgen Jost, and Janis Keck. IsUMap: Manifold Learning and Data Visualization leveraging Vietoris-Rips filtrations. 2024. [PUMA: imported topic_lifescience topic_mathfoundation yaff] URL

Nicola Vassena, and Peter F. Stadler. Unstable cores are the source of instability in chemical reaction networks. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, (480)2285:20230694, 2024. [PUMA: imported topic_mathfoundation yaff] URL

Mikael Vejdemo-Johansson, and Sayan Mukherjee. Multiple hypothesis testing with persistent homology. Foundations of Data Science, (4)4:667--705, 2022. [PUMA: topic_mathfoundation yaff] URL

Lukas Silvester Barth, Fatemeh, Fahimi, Parvaneh Joharinad, Jürgen Jost, Janis Keck, and Thomas Jan Mikhail. Fuzzy simplicial sets and their application to geometric data analysis. 2024. [PUMA: imported topic_lifescience topic_mathfoundation xack yaff] URL

Sarah von Löhneysen, Mario Mörl, and Peter F. Stadler. Limits of experimental evidence in RNA secondary structure prediction. Frontiers in Bioinformatics, (4)2024. [PUMA: imported topic_mathfoundation yaff] URL

Annachiara Korchmaros, David Schaller, Marc Hellmuth, and Peter F. Stadler. Quasi-best match graphs. Discrete Applied Mathematics, (331):104--125, 2023. [PUMA: Best Colored Hierarchies, Phylogenetic Rooted combinatorics, directed graphs, matches topic_mathfoundation trees, yaff] URL